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NOP56 (NOP56 ribonucleoprotein)

Identity

Alias_namesNOL5A
nucleolar protein 5A (56kD with KKE/D repeat)
nucleolar protein 5A (56kDa with KKE/D repeat)
NOP56 ribonucleoprotein homolog (yeast)
Alias_symbol (synonym)SCA36
Other alias
HGNC (Hugo) NOP56
LocusID (NCBI) 10528
Atlas_Id 70907
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2652532 and ends at 2658393 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NASP (1p34.1) / NOP56 (20p13)NOP56 (20p13) / PLPP3 (1p32.2)NOP56 (20p13) / RBPMS (8p12)
NOP56 (20p13) / SLC44A2 (19p13.2)UBL4B (1p13.3) / NOP56 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

žTR><D UIDTH=15%>NDEx Network
Nomenclature
HGNC (Hugo)NOP56   15911
Cards
Entrez_Gene (NCBI)NOP56  10528  NOP56 ribonucleoprotein
AliasesNOL5A; SCA36
GeneCards (Weizmann)NOP56
Ensembl hg19 (Hinxton)ENSG00000101361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101361 [Gene_View]  chr20:2652532-2658393 [Contig_View]  NOP56 [Vega]
ICGC DataPortalENSG00000101361
TCGA cBioPortalNOP56
AceView (NCBI)NOP56
Genatlas (Paris)NOP56
WikiGenes10528
SOURCE (Princeton)NOP56
Genetics Home Reference (NIH)NOP56
Genomic and cartography
GoldenPath hg38 (UCSC)NOP56  -     chr20:2652532-2658393 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP56  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblNOP56 - 20p13 [CytoView hg19]  NOP56 - 20p13 [CytoView hg38]
Mapping of homologs : NCBINOP56 [Mapview hg19]  NOP56 [Mapview hg38]
OMIM614153   614154   
Gene and transcription
Genbank (Entrez)AK097186 AK292721 BC004937 BC018421 BC035369
RefSeq transcript (Entrez)NM_006392
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP56
Cluster EST : UnigeneHs.376064 [ NCBI ]
CGAP (NCI)Hs.376064
Alternative Splicing GalleryENSG00000101361
Gene ExpressionNOP56 [ NCBI-GEO ]   NOP56 [ EBI - ARRAY_EXPRESS ]   NOP56 [ SEEK ]   NOP56 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10528
GTEX Portal (Tissue expression)NOP56
Human Protein AtlasENSG00000101361-NOP56 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00567
Splice isoforms : SwissVarO00567
PhosPhoSitePlusO00567
Domaine pattern : Prosite (Expaxy)NOP (PS51358)   
Domains : Interpro (EBI)NOP5_N    Nop_dom    NOSIC   
Domain families : Pfam (Sanger)Nop (PF01798)    NOP5NT (PF08156)   
Domain families : Pfam (NCBI)pfam01798    pfam08156   
Domain families : Smart (EMBL)NOSIC (SM00931)  
Conserved Domain (NCBI)NOP56
DMDM Disease mutations10528
Blocks (Seattle)NOP56
SuperfamilyO00567
Human Protein Atlas [tissue]ENSG00000101361-NOP56 [tissue]
Peptide AtlasO00567
HPRD10119
IPIIPI00411937   IPI00642697   IPI00984526   IPI00552225   
Protein Interaction databases
DIP (DOE-UCLA)O00567
IntAct (EBI)O00567
FunCoupENSG00000101361
BioGRIDNOP56
STRING (EMBL)NOP56
ZODIACNOP56
Ontologies - Pathways
QuickGOO00567
Ontology : AmiGOrRNA modification  fibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  rRNA processing  membrane  snoRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  cadherin binding  pre-snoRNP complex  histone methyltransferase binding  
Ontology : EGO-EBIrRNA modification  fibrillar center  RNA binding  protein binding  nucleoplasm  nucleolus  small nucleolar ribonucleoprotein complex  cytoplasm  rRNA processing  membrane  snoRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  cadherin binding  pre-snoRNP complex  histone methyltransferase binding  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NOP56
Atlas of Cancer Signalling NetworkNOP56
Wikipedia pathwaysNOP56
Orthology - Evolution
OrthoDB10528
GeneTree (enSembl)ENSG00000101361
Phylogenetic Trees/Animal Genes : TreeFamNOP56
HOVERGENO00567
HOGENOMO00567
Homologs : HomoloGeneNOP56
Homology/Alignments : Family Browser (UCSC)NOP56
Gene fusions - Rearrangements
Fusion: Tumor Portal NOP56
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP56
dbVarNOP56
ClinVarNOP56
1000_GenomesNOP56 
Exome Variant ServerNOP56
ExAC (Exome Aggregation Consortium)ENSG00000101361
GNOMAD BrowserENSG00000101361
Genetic variants : HAPMAP10528
Genomic Variants (DGV)NOP56 [DGVbeta]
DECIPHERNOP56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP56 
Mutations
ICGC Data PortalNOP56 
TCGA Data PortalNOP56 
Broad Tumor PortalNOP56
OASIS PortalNOP56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOP56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOP56
DgiDB (Drug Gene Interaction Database)NOP56
DoCM (Curated mutations)NOP56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP56 (select a term)
intoGenNOP56
Cancer3DNOP56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614153    614154   
Orphanet20355   
MedgenNOP56
Genetic Testing Registry NOP56
NextProtO00567 [Medical]
TSGene10528
GENETestsNOP56
Target ValidationNOP56
Huge Navigator NOP56 [HugePedia]
snp3D : Map Gene to Disease10528
BioCentury BCIQNOP56
ClinGenNOP56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10528
Chemical/Pharm GKB GenePA164724063
Clinical trialNOP56
Miscellaneous
canSAR (ICR)NOP56 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP56
EVEXNOP56
GoPubMedNOP56
iHOPNOP56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:11 CET 2017

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