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NOP58 (NOP58 ribonucleoprotein)

Identity

Alias_namesNOP58 ribonucleoprotein homolog (yeast)
Alias_symbol (synonym)NOP5
HSPC120
Other aliasNOP5/NOP58
HGNC (Hugo) NOP58
LocusID (NCBI) 51602
Atlas_Id 53028
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 202265716 and ends at 202303661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BID (22q11.21) / NOP58 (2q33.1)CMPK1 (1p33) / NOP58 (2q33.1)NOP58 (2q33.1) / AC079354.1 ()
NOP58 (2q33.1) / GPR157 (1p36.23)NOP58 (2q33.1) / NAMPT (7q22.3)NOP58 (2q33.1) / RPL30 (8q22.2)
STRADB (2q33.1) / NOP58 (2q33.1)NOP58 2q33.1 AC079354.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOP58   29926
Cards
Entrez_Gene (NCBI)NOP58  51602  NOP58 ribonucleoprotein
AliasesHSPC120; NOP5; NOP5/NOP58
GeneCards (Weizmann)NOP58
Ensembl hg19 (Hinxton)ENSG00000055044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000055044 [Gene_View]  chr2:202265716-202303661 [Contig_View]  NOP58 [Vega]
ICGC DataPortalENSG00000055044
TCGA cBioPortalNOP58
AceView (NCBI)NOP58
Genatlas (Paris)NOP58
WikiGenes51602
SOURCE (Princeton)NOP58
Genetics Home Reference (NIH)NOP58
Genomic and cartography
GoldenPath hg38 (UCSC)NOP58  -     chr2:202265716-202303661 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP58  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblNOP58 - 2q33.1 [CytoView hg19]  NOP58 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBINOP58 [Mapview hg19]  NOP58 [Mapview hg38]
OMIM616742   
Gene and transcription
Genbank (Entrez)AF123534 AF161469 AF263608 AK023975 AK300844
RefSeq transcript (Entrez)NM_015934
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP58
Cluster EST : UnigeneHs.471104 [ NCBI ]
CGAP (NCI)Hs.471104
Alternative Splicing GalleryENSG00000055044
Gene ExpressionNOP58 [ NCBI-GEO ]   NOP58 [ EBI - ARRAY_EXPRESS ]   NOP58 [ SEEK ]   NOP58 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51602
GTEX Portal (Tissue expression)NOP58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2X3
Splice isoforms : SwissVarQ9Y2X3
PhosPhoSitePlusQ9Y2X3
Domaine pattern : Prosite (Expaxy)NOP (PS51358)   
Domains : Interpro (EBI)NOP5_N    Nop_dom    NOSIC   
Domain families : Pfam (Sanger)Nop (PF01798)    NOP5NT (PF08156)   
Domain families : Pfam (NCBI)pfam01798    pfam08156   
Domain families : Smart (EMBL)NOSIC (SM00931)  
Conserved Domain (NCBI)NOP58
DMDM Disease mutations51602
Blocks (Seattle)NOP58
SuperfamilyQ9Y2X3
Human Protein AtlasENSG00000055044
Peptide AtlasQ9Y2X3
HPRD11036
IPIIPI00006379   IPI00917530   IPI00924866   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2X3
IntAct (EBI)Q9Y2X3
FunCoupENSG00000055044
BioGRIDNOP58
STRING (EMBL)NOP58
ZODIACNOP58
Ontologies - Pathways
QuickGOQ9Y2X3
Ontology : AmiGOrRNA modification  TFIID-class transcription factor binding  fibrillar center  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  small nucleolar ribonucleoprotein complex  cytosol  rRNA processing  Cajal body  membrane  cell growth  snoRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  snoRNA localization  ATPase binding  pre-snoRNP complex  
Ontology : EGO-EBIrRNA modification  TFIID-class transcription factor binding  fibrillar center  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  nucleolus  small nucleolar ribonucleoprotein complex  cytosol  rRNA processing  Cajal body  membrane  cell growth  snoRNA binding  box C/D snoRNP complex  box C/D snoRNP complex  small-subunit processome  snoRNA localization  ATPase binding  pre-snoRNP complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOP58
Atlas of Cancer Signalling NetworkNOP58
Wikipedia pathwaysNOP58
Orthology - Evolution
OrthoDB51602
GeneTree (enSembl)ENSG00000055044
Phylogenetic Trees/Animal Genes : TreeFamNOP58
HOVERGENQ9Y2X3
HOGENOMQ9Y2X3
Homologs : HomoloGeneNOP58
Homology/Alignments : Family Browser (UCSC)NOP58
Gene fusions - Rearrangements
Fusion : MitelmanSTRADB/NOP58 [2q33.1/2q33.1]  [del(2)(q33)]  [del(2)(q33q33)]  
[t(2;2)(q33;q33)]  
Fusion: TCGANOP58 2q33.1 AC079354.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP58
dbVarNOP58
ClinVarNOP58
1000_GenomesNOP58 
Exome Variant ServerNOP58
ExAC (Exome Aggregation Consortium)NOP58 (select the gene name)
Genetic variants : HAPMAP51602
Genomic Variants (DGV)NOP58 [DGVbeta]
DECIPHERNOP58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP58 
Mutations
ICGC Data PortalNOP58 
TCGA Data PortalNOP58 
Broad Tumor PortalNOP58
OASIS PortalNOP58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOP58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOP58
DgiDB (Drug Gene Interaction Database)NOP58
DoCM (Curated mutations)NOP58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP58 (select a term)
intoGenNOP58
Cancer3DNOP58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616742   
Orphanet
MedgenNOP58
Genetic Testing Registry NOP58
NextProtQ9Y2X3 [Medical]
TSGene51602
GENETestsNOP58
Target ValidationNOP58
Huge Navigator NOP58 [HugePedia]
snp3D : Map Gene to Disease51602
BioCentury BCIQNOP58
ClinGenNOP58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51602
Chemical/Pharm GKB GenePA164724092
Clinical trialNOP58
Miscellaneous
canSAR (ICR)NOP58 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP58
EVEXNOP58
GoPubMedNOP58
iHOPNOP58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:08 CEST 2017

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