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NOP58 (NOP58 ribonucleoprotein)

Identity

Alias (NCBI)HSPC120
NOP5
NOP5/NOP58
HGNC (Hugo) NOP58
HGNC Alias symbNOP5
HSPC120
HGNC Previous nameNOP58 ribonucleoprotein homolog (yeast)
LocusID (NCBI) 51602
Atlas_Id 53028
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 202265763 and ends at 202303661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BID (22q11.21) / NOP58 (2q33.1)CMPK1 (1p33) / NOP58 (2q33.1)NOP58 (2q33.1) / AC079354.1 ()
NOP58 (2q33.1) / GPR157 (1p36.23)NOP58 (2q33.1) / NAMPT (7q22.3)NOP58 (2q33.1) / RPL30 (8q22.2)
STRADB (2q33.1) / NOP58 (2q33.1)NOP58 2q33.1 AC079354.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NOP58   29926
Cards
Entrez_Gene (NCBI)NOP58    NOP58 ribonucleoprotein
AliasesHSPC120; NOP5; NOP5/NOP58
GeneCards (Weizmann)NOP58
Ensembl hg19 (Hinxton)ENSG00000055044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000055044 [Gene_View]  ENSG00000055044 [Sequence]  chr2:202265763-202303661 [Contig_View]  NOP58 [Vega]
ICGC DataPortalENSG00000055044
TCGA cBioPortalNOP58
AceView (NCBI)NOP58
Genatlas (Paris)NOP58
SOURCE (Princeton)NOP58
Genetics Home Reference (NIH)NOP58
Genomic and cartography
GoldenPath hg38 (UCSC)NOP58  -     chr2:202265763-202303661 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP58  -     2q33.1   [Description]    (hg19-Feb_2009)
GoldenPathNOP58 - 2q33.1 [CytoView hg19]  NOP58 - 2q33.1 [CytoView hg38]
ImmunoBaseENSG00000055044
Genome Data Viewer NCBINOP58 [Mapview hg19]  
OMIM616742   
Gene and transcription
Genbank (Entrez)AF123534 AF161469 AF263608 AK023975 AK300844
RefSeq transcript (Entrez)NM_015934
Consensus coding sequences : CCDS (NCBI)NOP58
Gene ExpressionNOP58 [ NCBI-GEO ]   NOP58 [ EBI - ARRAY_EXPRESS ]   NOP58 [ SEEK ]   NOP58 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP58 [ Firebrowse - Broad ]
GenevisibleExpression of NOP58 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51602
GTEX Portal (Tissue expression)NOP58
Human Protein AtlasENSG00000055044-NOP58 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2X3
PhosPhoSitePlusQ9Y2X3
Domaine pattern : Prosite (Expaxy)NOP (PS51358)   
Domains : Interpro (EBI)Helix_hairpin_bin_sf    NOP5_N    Nop_C    Nop_dom    Nop_dom_sf    NOSIC   
Domain families : Pfam (Sanger)Nop (PF01798)    NOP5NT (PF08156)   
Domain families : Pfam (NCBI)pfam01798    pfam08156   
Domain families : Smart (EMBL)NOSIC (SM00931)  
Conserved Domain (NCBI)NOP58
SuperfamilyQ9Y2X3
AlphaFold pdb e-kbQ9Y2X3   
Human Protein Atlas [tissue]ENSG00000055044-NOP58 [tissue]
HPRD11036
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2X3
IntAct (EBI)Q9Y2X3
BioGRIDNOP58
STRING (EMBL)NOP58
ZODIACNOP58
Ontologies - Pathways
QuickGOQ9Y2X3
Ontology : AmiGOTFIID-class transcription factor complex binding  fibrillar center  RNA binding  protein binding  nucleoplasm  nucleoplasm  nucleolus  nucleolus  sno(s)RNA-containing ribonucleoprotein complex  cytosol  rRNA processing  Cajal body  membrane  snoRNA binding  snoRNA binding  box C/D RNP complex  box C/D RNP complex  box C/D RNP complex  small-subunit processome  snoRNA localization  ATPase binding  pre-snoRNP complex  
Ontology : EGO-EBITFIID-class transcription factor complex binding  fibrillar center  RNA binding  protein binding  nucleoplasm  nucleoplasm  nucleolus  nucleolus  sno(s)RNA-containing ribonucleoprotein complex  cytosol  rRNA processing  Cajal body  membrane  snoRNA binding  snoRNA binding  box C/D RNP complex  box C/D RNP complex  box C/D RNP complex  small-subunit processome  snoRNA localization  ATPase binding  pre-snoRNP complex  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkNOP58
Atlas of Cancer Signalling NetworkNOP58
Wikipedia pathwaysNOP58
Orthology - Evolution
OrthoDB51602
GeneTree (enSembl)ENSG00000055044
Phylogenetic Trees/Animal Genes : TreeFamNOP58
Homologs : HomoloGeneNOP58
Homology/Alignments : Family Browser (UCSC)NOP58
Gene fusions - Rearrangements
Fusion : MitelmanSTRADB/NOP58 [2q33.1/2q33.1]  
Fusion : QuiverNOP58
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP58
dbVarNOP58
ClinVarNOP58
MonarchNOP58
1000_GenomesNOP58 
Exome Variant ServerNOP58
GNOMAD BrowserENSG00000055044
Varsome BrowserNOP58
ACMGNOP58 variants
VarityQ9Y2X3
Genomic Variants (DGV)NOP58 [DGVbeta]
DECIPHERNOP58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP58 
Mutations
ICGC Data PortalNOP58 
TCGA Data PortalNOP58 
Broad Tumor PortalNOP58
OASIS PortalNOP58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP58  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOP58
Mutations and Diseases : HGMDNOP58
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNOP58
DgiDB (Drug Gene Interaction Database)NOP58
DoCM (Curated mutations)NOP58
CIViC (Clinical Interpretations of Variants in Cancer)NOP58
Cancer3DNOP58
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616742   
Orphanet
DisGeNETNOP58
MedgenNOP58
Genetic Testing Registry NOP58
NextProtQ9Y2X3 [Medical]
GENETestsNOP58
Target ValidationNOP58
Huge Navigator NOP58 [HugePedia]
ClinGenNOP58
Clinical trials, drugs, therapy
MyCancerGenomeNOP58
Protein Interactions : CTDNOP58
Pharm GKB GenePA164724092
PharosQ9Y2X3
Clinical trialNOP58
Miscellaneous
canSAR (ICR)NOP58
HarmonizomeNOP58
DataMed IndexNOP58
Probes
Litterature
PubMed135 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOP58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:03 CEST 2021

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