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NOP9 (NOP9 nucleolar protein)

Identity

Alias (NCBI)C14orf21
HGNC (Hugo) NOP9
HGNC Previous nameC14orf21
HGNC Previous namechromosome 14 open reading frame 21
 NOP9 nucleolar protein homolog (yeast)
LocusID (NCBI) 161424
Atlas_Id 70908
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24299850 and ends at 24309124 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NOP9   19826
Cards
Entrez_Gene (NCBI)NOP9    NOP9 nucleolar protein
AliasesC14orf21
GeneCards (Weizmann)NOP9
Ensembl hg19 (Hinxton)ENSG00000196943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196943 [Gene_View]  ENSG00000196943 [Sequence]  chr14:24299850-24309124 [Contig_View]  NOP9 [Vega]
ICGC DataPortalENSG00000196943
TCGA cBioPortalNOP9
AceView (NCBI)NOP9
Genatlas (Paris)NOP9
SOURCE (Princeton)NOP9
Genetics Home Reference (NIH)NOP9
Genomic and cartography
GoldenPath hg38 (UCSC)NOP9  -     chr14:24299850-24309124 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP9  -     14q12   [Description]    (hg19-Feb_2009)
GoldenPathNOP9 - 14q12 [CytoView hg19]  NOP9 - 14q12 [CytoView hg38]
ImmunoBaseENSG00000196943
Genome Data Viewer NCBINOP9 [Mapview hg19]  
OMIM618308   
Gene and transcription
Genbank (Entrez)AA651879 AB095941 AK025512 AK123717 BC015481
RefSeq transcript (Entrez)NM_001286367 NM_174913
Consensus coding sequences : CCDS (NCBI)NOP9
Gene ExpressionNOP9 [ NCBI-GEO ]   NOP9 [ EBI - ARRAY_EXPRESS ]   NOP9 [ SEEK ]   NOP9 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP9 [ Firebrowse - Broad ]
GenevisibleExpression of NOP9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161424
GTEX Portal (Tissue expression)NOP9
Human Protein AtlasENSG00000196943-NOP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U38
PhosPhoSitePlusQ86U38
Domains : Interpro (EBI)ARM-like    ARM-type_fold    NOP9    Pumilio_RNA-bd_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)Pumilio (SM00025)  
Conserved Domain (NCBI)NOP9
SuperfamilyQ86U38
AlphaFold pdb e-kbQ86U38   
Human Protein Atlas [tissue]ENSG00000196943-NOP9 [tissue]
HPRD12643
Protein Interaction databases
DIP (DOE-UCLA)Q86U38
IntAct (EBI)Q86U38
BioGRIDNOP9
STRING (EMBL)NOP9
ZODIACNOP9
Ontologies - Pathways
QuickGOQ86U38
Ontology : AmiGOribosomal small subunit export from nucleus  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  RNA binding  cellular_component  nucleolus  biological_process  90S preribosome  preribosome, small subunit precursor  
Ontology : EGO-EBIribosomal small subunit export from nucleus  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  RNA binding  cellular_component  nucleolus  biological_process  90S preribosome  preribosome, small subunit precursor  
NDEx NetworkNOP9
Atlas of Cancer Signalling NetworkNOP9
Wikipedia pathwaysNOP9
Orthology - Evolution
OrthoDB161424
GeneTree (enSembl)ENSG00000196943
Phylogenetic Trees/Animal Genes : TreeFamNOP9
Homologs : HomoloGeneNOP9
Homology/Alignments : Family Browser (UCSC)NOP9
Gene fusions - Rearrangements
Fusion : QuiverNOP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP9
dbVarNOP9
ClinVarNOP9
MonarchNOP9
1000_GenomesNOP9 
Exome Variant ServerNOP9
GNOMAD BrowserENSG00000196943
Varsome BrowserNOP9
ACMGNOP9 variants
VarityQ86U38
Genomic Variants (DGV)NOP9 [DGVbeta]
DECIPHERNOP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP9 
Mutations
ICGC Data PortalNOP9 
TCGA Data PortalNOP9 
Broad Tumor PortalNOP9
OASIS PortalNOP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOP9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNOP9
Mutations and Diseases : HGMDNOP9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNOP9
DgiDB (Drug Gene Interaction Database)NOP9
DoCM (Curated mutations)NOP9
CIViC (Clinical Interpretations of Variants in Cancer)NOP9
Cancer3DNOP9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618308   
Orphanet
DisGeNETNOP9
MedgenNOP9
Genetic Testing Registry NOP9
NextProtQ86U38 [Medical]
GENETestsNOP9
Target ValidationNOP9
Huge Navigator NOP9 [HugePedia]
ClinGenNOP9
Clinical trials, drugs, therapy
MyCancerGenomeNOP9
Protein Interactions : CTDNOP9
Pharm GKB GenePA134867241
PharosQ86U38
Clinical trialNOP9
Miscellaneous
canSAR (ICR)NOP9
HarmonizomeNOP9
DataMed IndexNOP9
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNOP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:12:56 CEST 2021

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