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NOP9 (NOP9 nucleolar protein)

Identity

Alias_namesC14orf21
chromosome 14 open reading frame 21
NOP9 nucleolar protein homolog (yeast)
Other alias
HGNC (Hugo) NOP9
LocusID (NCBI) 161424
Atlas_Id 70908
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24299854 and ends at 24309126 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute
<.b>

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOP9   19826
Cards
Entrez_Gene (NCBI)NOP9  161424  NOP9 nucleolar protein
AliasesC14orf21
GeneCards (Weizmann)NOP9
Ensembl hg19 (Hinxton)ENSG00000196943 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196943 [Gene_View]  chr14:24299854-24309126 [Contig_View]  NOP9 [Vega]
ICGC DataPortalENSG00000196943
TCGA cBioPortalNOP9
AceView (NCBI)NOP9
Genatlas (Paris)NOP9
WikiGenes161424
SOURCE (Princeton)NOP9
Genetics Home Reference (NIH)NOP9
Genomic and cartography
GoldenPath hg38 (UCSC)NOP9  -     chr14:24299854-24309126 +  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOP9  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblNOP9 - 14q12 [CytoView hg19]  NOP9 - 14q12 [CytoView hg38]
Mapping of homologs : NCBINOP9 [Mapview hg19]  NOP9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA651879 AB095941 AK025512 AK123717 BC015481
RefSeq transcript (Entrez)NM_001286367 NM_174913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOP9
Cluster EST : UnigeneHs.708040 [ NCBI ]
CGAP (NCI)Hs.708040
Alternative Splicing GalleryENSG00000196943
Gene ExpressionNOP9 [ NCBI-GEO ]   NOP9 [ EBI - ARRAY_EXPRESS ]   NOP9 [ SEEK ]   NOP9 [ MEM ]
Gene Expression Viewer (FireBrowse)NOP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161424
GTEX Portal (Tissue expression)NOP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U38
Splice isoforms : SwissVarQ86U38
PhosPhoSitePlusQ86U38
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Pumilio_RNA-bd_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)Pumilio (SM00025)  
Conserved Domain (NCBI)NOP9
DMDM Disease mutations161424
Blocks (Seattle)NOP9
SuperfamilyQ86U38
Human Protein AtlasENSG00000196943
Peptide AtlasQ86U38
HPRD12643
IPIIPI00216999   IPI01011701   IPI00793080   
Protein Interaction databases
DIP (DOE-UCLA)Q86U38
IntAct (EBI)Q86U38
FunCoupENSG00000196943
BioGRIDNOP9
STRING (EMBL)NOP9
ZODIACNOP9
Ontologies - Pathways
QuickGOQ86U38
Ontology : AmiGORNA binding  cellular_component  biological_process  
Ontology : EGO-EBIRNA binding  cellular_component  biological_process  
NDEx NetworkNOP9
Atlas of Cancer Signalling NetworkNOP9
Wikipedia pathwaysNOP9
Orthology - Evolution
OrthoDB161424
GeneTree (enSembl)ENSG00000196943
Phylogenetic Trees/Animal Genes : TreeFamNOP9
HOVERGENQ86U38
HOGENOMQ86U38
Homologs : HomoloGeneNOP9
Homology/Alignments : Family Browser (UCSC)NOP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOP9
dbVarNOP9
ClinVarNOP9
1000_GenomesNOP9 
Exome Variant ServerNOP9
ExAC (Exome Aggregation Consortium)NOP9 (select the gene name)
Genetic variants : HAPMAP161424
Genomic Variants (DGV)NOP9 [DGVbeta]
DECIPHERNOP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOP9 
Mutations
ICGC Data PortalNOP9 
TCGA Data PortalNOP9 
Broad Tumor PortalNOP9
OASIS PortalNOP9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNOP9
BioMutasearch NOP9
DgiDB (Drug Gene Interaction Database)NOP9
DoCM (Curated mutations)NOP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOP9 (select a term)
intoGenNOP9
Cancer3DNOP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOP9
Genetic Testing Registry NOP9
NextProtQ86U38 [Medical]
TSGene161424
GENETestsNOP9
Target ValidationNOP9
Huge Navigator NOP9 [HugePedia]
snp3D : Map Gene to Disease161424
BioCentury BCIQNOP9
ClinGenNOP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161424
Chemical/Pharm GKB GenePA134867241
Clinical trialNOP9
Miscellaneous
canSAR (ICR)NOP9 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOP9
EVEXNOP9
GoPubMedNOP9
iHOPNOP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:11 CEST 2017

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