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NOSTRIN (nitric oxide synthase trafficking)

Identity

Alias_namesnitric oxide synthase trafficker
Alias_symbol (synonym)MGC20702
Other aliasDaIP2
HGNC (Hugo) NOSTRIN
LocusID (NCBI) 115677
Atlas_Id 41555
Location 2q24.3  [Link to chromosome band 2q24]
Location_base_pair Starts at 168802590 and ends at 168865339 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CFL2 (14q13.1) / NOSTRIN (2q24.3)STAM2 (2q23.3) / NOSTRIN (2q24.3)STAM2 2q23.3 / NOSTRIN 2q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOSTRIN   20203
Cards
Entrez_Gene (NCBI)NOSTRIN  115677  nitric oxide synthase trafficking
AliasesDaIP2
GeneCards (Weizmann)NOSTRIN
Ensembl hg19 (Hinxton)ENSG00000163072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163072 [Gene_View]  chr2:168802590-168865339 [Contig_View]  NOSTRIN [Vega]
ICGC DataPortalENSG00000163072
TCGA cBioPortalNOSTRIN
AceView (NCBI)NOSTRIN
Genatlas (Paris)NOSTRIN
WikiGenes115677
SOURCE (Princeton)NOSTRIN
Genetics Home Reference (NIH)NOSTRIN
Genomic and cartography
GoldenPath hg38 (UCSC)NOSTRIN  -     chr2:168802590-168865339 +  2q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOSTRIN  -     2q24.3   [Description]    (hg19-Feb_2009)
EnsemblNOSTRIN - 2q24.3 [CytoView hg19]  NOSTRIN - 2q24.3 [CytoView hg38]
Mapping of homologs : NCBINOSTRIN [Mapview hg19]  NOSTRIN [Mapview hg38]
OMIM607496   
Gene and transcription
Genbank (Entrez)AJ532842 AK002203 AK093444 AK123698 AK290254
RefSeq transcript (Entrez)NM_001039724 NM_001171631 NM_001171632 NM_052946
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOSTRIN
Cluster EST : UnigeneHs.189780 [ NCBI ]
CGAP (NCI)Hs.189780
Alternative Splicing GalleryENSG00000163072
Gene ExpressionNOSTRIN [ NCBI-GEO ]   NOSTRIN [ EBI - ARRAY_EXPRESS ]   NOSTRIN [ SEEK ]   NOSTRIN [ MEM ]
Gene Expression Viewer (FireBrowse)NOSTRIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115677
GTEX Portal (Tissue expression)NOSTRIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVI9
Splice isoforms : SwissVarQ8IVI9
PhosPhoSitePlusQ8IVI9
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    SH3 (PS50002)   
Domains : Interpro (EBI)F_BAR    FCH_dom    HR1_rho-bd    SH3_domain   
Domain families : Pfam (Sanger)FCH (PF00611)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00611    pfam14604   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)NOSTRIN
DMDM Disease mutations115677
Blocks (Seattle)NOSTRIN
PDB (SRS)2YUN   
PDB (PDBSum)2YUN   
PDB (IMB)2YUN   
PDB (RSDB)2YUN   
Structural Biology KnowledgeBase2YUN   
SCOP (Structural Classification of Proteins)2YUN   
CATH (Classification of proteins structures)2YUN   
SuperfamilyQ8IVI9
Human Protein AtlasENSG00000163072
Peptide AtlasQ8IVI9
HPRD06324
IPIIPI00549783   IPI00738288   IPI00848266   IPI00955888   IPI00927526   IPI00925515   IPI00925736   IPI00926335   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVI9
IntAct (EBI)Q8IVI9
FunCoupENSG00000163072
BioGRIDNOSTRIN
STRING (EMBL)NOSTRIN
ZODIACNOSTRIN
Ontologies - Pathways
QuickGOQ8IVI9
Ontology : AmiGODNA binding  protein binding  nucleus  cytoskeleton  plasma membrane  endocytosis  signal transduction  endocytic vesicle membrane  negative regulation of transcription, DNA-templated  regulation of nitric-oxide synthase activity  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  cytoskeleton  plasma membrane  endocytosis  signal transduction  endocytic vesicle membrane  negative regulation of transcription, DNA-templated  regulation of nitric-oxide synthase activity  
NDEx NetworkNOSTRIN
Atlas of Cancer Signalling NetworkNOSTRIN
Wikipedia pathwaysNOSTRIN
Orthology - Evolution
OrthoDB115677
GeneTree (enSembl)ENSG00000163072
Phylogenetic Trees/Animal Genes : TreeFamNOSTRIN
HOVERGENQ8IVI9
HOGENOMQ8IVI9
Homologs : HomoloGeneNOSTRIN
Homology/Alignments : Family Browser (UCSC)NOSTRIN
Gene fusions - Rearrangements
Fusion : MitelmanSTAM2/NOSTRIN [2q23.3/2q24.3]  [t(2;2)(q23;q24)]  
Fusion: TCGASTAM2 2q23.3 NOSTRIN 2q24.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOSTRIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOSTRIN
dbVarNOSTRIN
ClinVarNOSTRIN
1000_GenomesNOSTRIN 
Exome Variant ServerNOSTRIN
ExAC (Exome Aggregation Consortium)NOSTRIN (select the gene name)
Genetic variants : HAPMAP115677
Genomic Variants (DGV)NOSTRIN [DGVbeta]
DECIPHERNOSTRIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOSTRIN 
Mutations
ICGC Data PortalNOSTRIN 
TCGA Data PortalNOSTRIN 
Broad Tumor PortalNOSTRIN
OASIS PortalNOSTRIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOSTRIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOSTRIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOSTRIN
DgiDB (Drug Gene Interaction Database)NOSTRIN
DoCM (Curated mutations)NOSTRIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOSTRIN (select a term)
intoGenNOSTRIN
Cancer3DNOSTRIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607496   
Orphanet
MedgenNOSTRIN
Genetic Testing Registry NOSTRIN
NextProtQ8IVI9 [Medical]
TSGene115677
GENETestsNOSTRIN
Target ValidationNOSTRIN
Huge Navigator NOSTRIN [HugePedia]
snp3D : Map Gene to Disease115677
BioCentury BCIQNOSTRIN
ClinGenNOSTRIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115677
Chemical/Pharm GKB GenePA134992787
Clinical trialNOSTRIN
Miscellaneous
canSAR (ICR)NOSTRIN (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOSTRIN
EVEXNOSTRIN
GoPubMedNOSTRIN
iHOPNOSTRIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:22:27 CEST 2017

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