Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NOTO (notochord homeobox)

Identity

Alias_namesnotochord homolog (Xenopus laevis)
Other alias-
HGNC (Hugo) NOTO
LocusID (NCBI) 344022
Atlas_Id 70910
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73202258 and ends at 73211212 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOTO   31839
Cards
Entrez_Gene (NCBI)NOTO  344022  notochord homeobox
Aliases
GeneCards (Weizmann)NOTO
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:73202258-73211212 [Contig_View]  NOTO [Vega]
TCGA cBioPortalNOTO
AceView (NCBI)NOTO
Genatlas (Paris)NOTO
WikiGenes344022
SOURCE (Princeton)NOTO
Genetics Home Reference (NIH)NOTO
Genomic and cartography
GoldenPath hg38 (UCSC)NOTO  -     chr2:73202258-73211212 +  2p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOTO  -     2p13.2   [Description]    (hg19-Feb_2009)
EnsemblNOTO - 2p13.2 [CytoView hg19]  NOTO - 2p13.2 [CytoView hg38]
Mapping of homologs : NCBINOTO [Mapview hg19]  NOTO [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295936 AK316410
RefSeq transcript (Entrez)NM_001134462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOTO
Cluster EST : UnigeneHs.694384 [ NCBI ]
CGAP (NCI)Hs.694384
Gene ExpressionNOTO [ NCBI-GEO ]   NOTO [ EBI - ARRAY_EXPRESS ]   NOTO [ SEEK ]   NOTO [ MEM ]
Gene Expression Viewer (FireBrowse)NOTO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344022
GTEX Portal (Tissue expression)NOTO
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MTQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MTQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MTQ0
Splice isoforms : SwissVarA8MTQ0
PhosPhoSitePlusA8MTQ0
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)NOTO
DMDM Disease mutations344022
Blocks (Seattle)NOTO
SuperfamilyA8MTQ0
Peptide AtlasA8MTQ0
IPIIPI00247814   
Protein Interaction databases
DIP (DOE-UCLA)A8MTQ0
IntAct (EBI)A8MTQ0
BioGRIDNOTO
STRING (EMBL)NOTO
ZODIACNOTO
Ontologies - Pathways
QuickGOA8MTQ0
Ontology : AmiGOheart looping  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  embryonic pattern specification  dorsal/ventral pattern formation  notochord development  motile cilium assembly  regulation of cilium assembly  
Ontology : EGO-EBIheart looping  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  embryonic pattern specification  dorsal/ventral pattern formation  notochord development  motile cilium assembly  regulation of cilium assembly  
NDEx NetworkNOTO
Atlas of Cancer Signalling NetworkNOTO
Wikipedia pathwaysNOTO
Orthology - Evolution
OrthoDB344022
Phylogenetic Trees/Animal Genes : TreeFamNOTO
HOVERGENA8MTQ0
HOGENOMA8MTQ0
Homologs : HomoloGeneNOTO
Homology/Alignments : Family Browser (UCSC)NOTO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOTO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOTO
dbVarNOTO
ClinVarNOTO
1000_GenomesNOTO 
Exome Variant ServerNOTO
ExAC (Exome Aggregation Consortium)NOTO (select the gene name)
Genetic variants : HAPMAP344022
Genomic Variants (DGV)NOTO [DGVbeta]
DECIPHERNOTO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOTO 
Mutations
ICGC Data PortalNOTO 
TCGA Data PortalNOTO 
Broad Tumor PortalNOTO
OASIS PortalNOTO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOTO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOTO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOTO
DgiDB (Drug Gene Interaction Database)NOTO
DoCM (Curated mutations)NOTO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOTO (select a term)
intoGenNOTO
Cancer3DNOTO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOTO
Genetic Testing Registry NOTO
NextProtA8MTQ0 [Medical]
TSGene344022
GENETestsNOTO
Target ValidationNOTO
Huge Navigator NOTO [HugePedia]
snp3D : Map Gene to Disease344022
BioCentury BCIQNOTO
ClinGenNOTO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344022
Chemical/Pharm GKB GenePA134895171
Clinical trialNOTO
Miscellaneous
canSAR (ICR)NOTO (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOTO
EVEXNOTO
GoPubMedNOTO
iHOPNOTO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:32:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.