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NOVA1 (neuro-oncological ventral antigen 1)

Identity

Alias_namesneuro-oncological ventral antigen 1
Other aliasNova-1
HGNC (Hugo) NOVA1
LocusID (NCBI) 4857
Atlas_Id 41560
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 26915089 and ends at 27066960 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LDLRAD4 (18p11.21) / NOVA1 (14q12)NCOA1 (2p23.3) / NOVA1 (14q12)NOVA1 (14q12) / FUS (16p11.2)
NOVA1 (14q12) / KBTBD8 (3p14.1)NOVA1 (14q12) / YLPM1 (14q24.3)PHC3 (3q26.2) / NOVA1 (14q12)
RPL8 (8q24.3) / NOVA1 (14q12)C18orf1 NOVA1 14q12RPL8 8q24.3 / NOVA1 14q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOVA1   7886
Cards
Entrez_Gene (NCBI)NOVA1  4857  neuro-oncological ventral antigen 1
AliasesNova-1
GeneCards (Weizmann)NOVA1
Ensembl hg19 (Hinxton)ENSG00000139910 [Gene_View]  chr14:26915089-27066960 [Contig_View]  NOVA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000139910 [Gene_View]  chr14:26915089-27066960 [Contig_View]  NOVA1 [Vega]
ICGC DataPortalENSG00000139910
TCGA cBioPortalNOVA1
AceView (NCBI)NOVA1
Genatlas (Paris)NOVA1
WikiGenes4857
SOURCE (Princeton)NOVA1
Genetics Home Reference (NIH)NOVA1
Genomic and cartography
GoldenPath hg19 (UCSC)NOVA1  -     chr14:26915089-27066960 -  14q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOVA1  -     14q12   [Description]    (hg38-Dec_2013)
EnsemblNOVA1 - 14q12 [CytoView hg19]  NOVA1 - 14q12 [CytoView hg38]
Mapping of homologs : NCBINOVA1 [Mapview hg19]  NOVA1 [Mapview hg38]
OMIM602157   
Gene and transcription
Genbank (Entrez)AI569678 AK226114 AK289639 AK291022 AK291468
RefSeq transcript (Entrez)NM_002515 NM_006489 NM_006491
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)NOVA1
Cluster EST : UnigeneHs.31588 [ NCBI ]
CGAP (NCI)Hs.31588
Alternative Splicing GalleryENSG00000139910
Gene ExpressionNOVA1 [ NCBI-GEO ]   NOVA1 [ EBI - ARRAY_EXPRESS ]   NOVA1 [ SEEK ]   NOVA1 [ MEM ]
Gene Expression Viewer (FireBrowse)NOVA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4857
GTEX Portal (Tissue expression)NOVA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51513
Splice isoforms : SwissVarP51513
PhosPhoSitePlusP51513
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)NOVA1
DMDM Disease mutations4857
Blocks (Seattle)NOVA1
PDB (SRS)1DT4    2ANN    2ANR   
PDB (PDBSum)1DT4    2ANN    2ANR   
PDB (IMB)1DT4    2ANN    2ANR   
PDB (RSDB)1DT4    2ANN    2ANR   
Structural Biology KnowledgeBase1DT4    2ANN    2ANR   
SCOP (Structural Classification of Proteins)1DT4    2ANN    2ANR   
CATH (Classification of proteins structures)1DT4    2ANN    2ANR   
SuperfamilyP51513
Human Protein AtlasENSG00000139910
Peptide AtlasP51513
HPRD03693
IPIIPI00019244   IPI00221187   IPI00221188   IPI00816603   IPI01021264   IPI01018262   IPI01021871   IPI01020950   IPI01020747   IPI00956017   IPI01017995   
Protein Interaction databases
DIP (DOE-UCLA)P51513
IntAct (EBI)P51513
FunCoupENSG00000139910
BioGRIDNOVA1
STRING (EMBL)NOVA1
ZODIACNOVA1
Ontologies - Pathways
QuickGOP51513
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  mRNA binding  nucleus  nucleolus  RNA processing  synaptic transmission  locomotory behavior  RNA splicing  spinal cord development  intracellular membrane-bounded organelle  poly(A) RNA binding  regulation of mRNA processing  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  mRNA binding  nucleus  nucleolus  RNA processing  synaptic transmission  locomotory behavior  RNA splicing  spinal cord development  intracellular membrane-bounded organelle  poly(A) RNA binding  regulation of mRNA processing  
NDEx NetworkNOVA1
Atlas of Cancer Signalling NetworkNOVA1
Wikipedia pathwaysNOVA1
Orthology - Evolution
OrthoDB4857
GeneTree (enSembl)ENSG00000139910
Phylogenetic Trees/Animal Genes : TreeFamNOVA1
HOVERGENP51513
HOGENOMP51513
Homologs : HomoloGeneNOVA1
Homology/Alignments : Family Browser (UCSC)NOVA1
Gene fusions - Rearrangements
Fusion : MitelmanLDLRAD4/NOVA1 [18p11.21/14q12]  [t(14;18)(q12;p11)]  
Fusion : MitelmanRPL8/NOVA1 [8q24.3/14q12]  [t(8;14)(q24;q12)]  
Fusion: TCGAC18orf1 NOVA1 14q12 PRAD
Fusion: TCGARPL8 8q24.3 NOVA1 14q12 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOVA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOVA1
dbVarNOVA1
ClinVarNOVA1
1000_GenomesNOVA1 
Exome Variant ServerNOVA1
ExAC (Exome Aggregation Consortium)NOVA1 (select the gene name)
Genetic variants : HAPMAP4857
Genomic Variants (DGV)NOVA1 [DGVbeta]
DECIPHER (Syndromes)14:26915089-27066960  ENSG00000139910
CONAN: Copy Number AnalysisNOVA1 
Mutations
ICGC Data PortalNOVA1 
TCGA Data PortalNOVA1 
Broad Tumor PortalNOVA1
OASIS PortalNOVA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOVA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOVA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOVA1
DgiDB (Drug Gene Interaction Database)NOVA1
DoCM (Curated mutations)NOVA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOVA1 (select a term)
intoGenNOVA1
Cancer3DNOVA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602157   
Orphanet
MedgenNOVA1
Genetic Testing Registry NOVA1
NextProtP51513 [Medical]
TSGene4857
GENETestsNOVA1
Huge Navigator NOVA1 [HugePedia]
snp3D : Map Gene to Disease4857
BioCentury BCIQNOVA1
ClinGenNOVA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4857
Chemical/Pharm GKB GenePA31688
Clinical trialNOVA1
Miscellaneous
canSAR (ICR)NOVA1 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOVA1
EVEXNOVA1
GoPubMedNOVA1
iHOPNOVA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:08 CET 2017

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