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NOVA2 (neuro-oncological ventral antigen 2)

Identity

Alias_namesNOVA3
neuro-oncological ventral antigen 2
Alias_symbol (synonym)ANOVA
Other alias
HGNC (Hugo) NOVA2
LocusID (NCBI) 4858
Atlas_Id 41561
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 46442771 and ends at 46476657 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOVA2 (19q13.32) / LEUTX (19q13.2)NOVA2 19q13.32 / LEUTX 19q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOVA2   7887
Cards
Entrez_Gene (NCBI)NOVA2  4858  neuro-oncological ventral antigen 2
AliasesANOVA; NOVA3
GeneCards (Weizmann)NOVA2
Ensembl hg19 (Hinxton)ENSG00000104967 [Gene_View]  chr19:46442771-46476657 [Contig_View]  NOVA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104967 [Gene_View]  chr19:46442771-46476657 [Contig_View]  NOVA2 [Vega]
ICGC DataPortalENSG00000104967
TCGA cBioPortalNOVA2
AceView (NCBI)NOVA2
Genatlas (Paris)NOVA2
WikiGenes4858
SOURCE (Princeton)NOVA2
Genetics Home Reference (NIH)NOVA2
Genomic and cartography
GoldenPath hg19 (UCSC)NOVA2  -     chr19:46442771-46476657 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NOVA2  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblNOVA2 - 19q13.32 [CytoView hg19]  NOVA2 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBINOVA2 [Mapview hg19]  NOVA2 [Mapview hg38]
OMIM601991   
Gene and transcription
Genbank (Entrez)AF083898 AI990298 BC168367 BM666426 BQ631784
RefSeq transcript (Entrez)NM_002516
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)NOVA2
Cluster EST : UnigeneHs.375439 [ NCBI ]
CGAP (NCI)Hs.375439
Alternative Splicing GalleryENSG00000104967
Gene ExpressionNOVA2 [ NCBI-GEO ]   NOVA2 [ EBI - ARRAY_EXPRESS ]   NOVA2 [ SEEK ]   NOVA2 [ MEM ]
Gene Expression Viewer (FireBrowse)NOVA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4858
GTEX Portal (Tissue expression)NOVA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNW9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNW9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNW9
Splice isoforms : SwissVarQ9UNW9
PhosPhoSitePlusQ9UNW9
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)NOVA2
DMDM Disease mutations4858
Blocks (Seattle)NOVA2
PDB (SRS)1DTJ    1EC6   
PDB (PDBSum)1DTJ    1EC6   
PDB (IMB)1DTJ    1EC6   
PDB (RSDB)1DTJ    1EC6   
Structural Biology KnowledgeBase1DTJ    1EC6   
SCOP (Structural Classification of Proteins)1DTJ    1EC6   
CATH (Classification of proteins structures)1DTJ    1EC6   
SuperfamilyQ9UNW9
Human Protein AtlasENSG00000104967
Peptide AtlasQ9UNW9
HPRD03588
IPIIPI00156005   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNW9
IntAct (EBI)Q9UNW9
FunCoupENSG00000104967
BioGRIDNOVA2
STRING (EMBL)NOVA2
ZODIACNOVA2
Ontologies - Pathways
QuickGOQ9UNW9
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  nucleus  poly(A) RNA binding  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  nucleus  poly(A) RNA binding  
NDEx NetworkNOVA2
Atlas of Cancer Signalling NetworkNOVA2
Wikipedia pathwaysNOVA2
Orthology - Evolution
OrthoDB4858
GeneTree (enSembl)ENSG00000104967
Phylogenetic Trees/Animal Genes : TreeFamNOVA2
HOVERGENQ9UNW9
HOGENOMQ9UNW9
Homologs : HomoloGeneNOVA2
Homology/Alignments : Family Browser (UCSC)NOVA2
Gene fusions - Rearrangements
Fusion : MitelmanNOVA2/LEUTX [19q13.32/19q13.2]  
Fusion: TCGANOVA2 19q13.32 LEUTX 19q13.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOVA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOVA2
dbVarNOVA2
ClinVarNOVA2
1000_GenomesNOVA2 
Exome Variant ServerNOVA2
ExAC (Exome Aggregation Consortium)NOVA2 (select the gene name)
Genetic variants : HAPMAP4858
Genomic Variants (DGV)NOVA2 [DGVbeta]
DECIPHER (Syndromes)19:46442771-46476657  ENSG00000104967
CONAN: Copy Number AnalysisNOVA2 
Mutations
ICGC Data PortalNOVA2 
TCGA Data PortalNOVA2 
Broad Tumor PortalNOVA2
OASIS PortalNOVA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOVA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOVA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NOVA2
DgiDB (Drug Gene Interaction Database)NOVA2
DoCM (Curated mutations)NOVA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOVA2 (select a term)
intoGenNOVA2
Cancer3DNOVA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601991   
Orphanet
MedgenNOVA2
Genetic Testing Registry NOVA2
NextProtQ9UNW9 [Medical]
TSGene4858
GENETestsNOVA2
Huge Navigator NOVA2 [HugePedia]
snp3D : Map Gene to Disease4858
BioCentury BCIQNOVA2
ClinGenNOVA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4858
Chemical/Pharm GKB GenePA31689
Clinical trialNOVA2
Miscellaneous
canSAR (ICR)NOVA2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOVA2
EVEXNOVA2
GoPubMedNOVA2
iHOPNOVA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:09 CET 2017

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