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NOXRED1 (NADP dependent oxidoreductase domain containing 1)

Identity

Alias_namesC14orf148
chromosome 14 open reading frame 148
Alias_symbol (synonym)FLJ32809
Other alias
HGNC (Hugo) NOXRED1
LocusID (NCBI) 122945
Atlas_Id 70911
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 77394021 and ends at 77423056 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DCAF5 (14q24.1) / NOXRED1 (14q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NOXRED1   20487
Cards
Entrez_Gene (NCBI)NOXRED1  122945  NADP dependent oxidoreductase domain containing 1
AliasesC14orf148
GeneCards (Weizmann)NOXRED1
Ensembl hg19 (Hinxton)ENSG00000165555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165555 [Gene_View]  chr14:77394021-77423056 [Contig_View]  NOXRED1 [Vega]
ICGC DataPortalENSG00000165555
TCGA cBioPortalNOXRED1
AceView (NCBI)NOXRED1
Genatlas (Paris)NOXRED1
WikiGenes122945
SOURCE (Princeton)NOXRED1
Genetics Home Reference (NIH)NOXRED1
Genomic and cartography
GoldenPath hg38 (UCSC)NOXRED1  -     chr14:77394021-77423056 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NOXRED1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblNOXRED1 - 14q24.3 [CytoView hg19]  NOXRED1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBINOXRED1 [Mapview hg19]  NOXRED1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057371 BC066965 BI829015 DB021944 HQ448481
RefSeq transcript (Entrez)NM_001113475 NM_138791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NOXRED1
Cluster EST : UnigeneHs.97556 [ NCBI ]
CGAP (NCI)Hs.97556
Alternative Splicing GalleryENSG00000165555
Gene ExpressionNOXRED1 [ NCBI-GEO ]   NOXRED1 [ EBI - ARRAY_EXPRESS ]   NOXRED1 [ SEEK ]   NOXRED1 [ MEM ]
Gene Expression Viewer (FireBrowse)NOXRED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122945
GTEX Portal (Tissue expression)NOXRED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXP6
Splice isoforms : SwissVarQ6NXP6
Catalytic activity : Enzyme1.-.-.- [ Enzyme-Expasy ]   1.-.-.-1.-.-.- [ IntEnz-EBI ]   1.-.-.- [ BRENDA ]   1.-.-.- [ KEGG ]   
PhosPhoSitePlusQ6NXP6
Domains : Interpro (EBI)NAD(P)-bd_dom    P5C_Rdtase_cat_N    Pyrroline-COOH_reductase   
Domain families : Pfam (Sanger)F420_oxidored (PF03807)   
Domain families : Pfam (NCBI)pfam03807   
Conserved Domain (NCBI)NOXRED1
DMDM Disease mutations122945
Blocks (Seattle)NOXRED1
SuperfamilyQ6NXP6
Human Protein AtlasENSG00000165555
Peptide AtlasQ6NXP6
HPRD08140
IPIIPI00743780   IPI00829746   IPI01025458   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXP6
IntAct (EBI)Q6NXP6
FunCoupENSG00000165555
BioGRIDNOXRED1
STRING (EMBL)NOXRED1
ZODIACNOXRED1
Ontologies - Pathways
QuickGOQ6NXP6
Ontology : AmiGOmolecular_function  pyrroline-5-carboxylate reductase activity  cellular_component  proline biosynthetic process  biological_process  oxidation-reduction process  
Ontology : EGO-EBImolecular_function  pyrroline-5-carboxylate reductase activity  cellular_component  proline biosynthetic process  biological_process  oxidation-reduction process  
NDEx NetworkNOXRED1
Atlas of Cancer Signalling NetworkNOXRED1
Wikipedia pathwaysNOXRED1
Orthology - Evolution
OrthoDB122945
GeneTree (enSembl)ENSG00000165555
Phylogenetic Trees/Animal Genes : TreeFamNOXRED1
HOVERGENQ6NXP6
HOGENOMQ6NXP6
Homologs : HomoloGeneNOXRED1
Homology/Alignments : Family Browser (UCSC)NOXRED1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNOXRED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NOXRED1
dbVarNOXRED1
ClinVarNOXRED1
1000_GenomesNOXRED1 
Exome Variant ServerNOXRED1
ExAC (Exome Aggregation Consortium)NOXRED1 (select the gene name)
Genetic variants : HAPMAP122945
Genomic Variants (DGV)NOXRED1 [DGVbeta]
DECIPHERNOXRED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNOXRED1 
Mutations
ICGC Data PortalNOXRED1 
TCGA Data PortalNOXRED1 
Broad Tumor PortalNOXRED1
OASIS PortalNOXRED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNOXRED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNOXRED1
BioMutasearch NOXRED1
DgiDB (Drug Gene Interaction Database)NOXRED1
DoCM (Curated mutations)NOXRED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NOXRED1 (select a term)
intoGenNOXRED1
Cancer3DNOXRED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNOXRED1
Genetic Testing Registry NOXRED1
NextProtQ6NXP6 [Medical]
TSGene122945
GENETestsNOXRED1
Huge Navigator NOXRED1 [HugePedia]
snp3D : Map Gene to Disease122945
BioCentury BCIQNOXRED1
ClinGenNOXRED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122945
Chemical/Pharm GKB GenePA134935429
Clinical trialNOXRED1
Miscellaneous
canSAR (ICR)NOXRED1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNOXRED1
EVEXNOXRED1
GoPubMedNOXRED1
iHOPNOXRED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:14 CEST 2017

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