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NPAP1 (nuclear pore associated protein 1)

Identity

Alias_namesC15orf2
chromosome 15 open reading frame 2
Other alias
HGNC (Hugo) NPAP1
LocusID (NCBI) 23742
Atlas_Id 70912
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 24920541 and ends at 24928593 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPAP1   1190
Cards
Entrez_Gene (NCBI)NPAP1  23742  nuclear pore associated protein 1
AliasesC15orf2
GeneCards (Weizmann)NPAP1
Ensembl hg19 (Hinxton)ENSG00000185823 [Gene_View]  chr15:24920541-24928593 [Contig_View]  NPAP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185823 [Gene_View]  chr15:24920541-24928593 [Contig_View]  NPAP1 [Vega]
ICGC DataPortalENSG00000185823
TCGA cBioPortalNPAP1
AceView (NCBI)NPAP1
Genatlas (Paris)NPAP1
WikiGenes23742
SOURCE (Princeton)NPAP1
Genetics Home Reference (NIH)NPAP1
Genomic and cartography
GoldenPath hg19 (UCSC)NPAP1  -     chr15:24920541-24928593 +  15q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPAP1  -     15q11.2   [Description]    (hg38-Dec_2013)
EnsemblNPAP1 - 15q11.2 [CytoView hg19]  NPAP1 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBINPAP1 [Mapview hg19]  NPAP1 [Mapview hg38]
OMIM176270   610922   
Gene and transcription
Genbank (Entrez)BC148366
RefSeq transcript (Entrez)NM_018958
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_021413 NT_010194 NW_004929397
Consensus coding sequences : CCDS (NCBI)NPAP1
Cluster EST : UnigeneHs.649663 [ NCBI ]
CGAP (NCI)Hs.649663
Alternative Splicing GalleryENSG00000185823
Gene ExpressionNPAP1 [ NCBI-GEO ]   NPAP1 [ EBI - ARRAY_EXPRESS ]   NPAP1 [ SEEK ]   NPAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23742
GTEX Portal (Tissue expression)NPAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZP6
Splice isoforms : SwissVarQ9NZP6
PhosPhoSitePlusQ9NZP6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPAP1
DMDM Disease mutations23742
Blocks (Seattle)NPAP1
SuperfamilyQ9NZP6
Human Protein AtlasENSG00000185823
Peptide AtlasQ9NZP6
HPRD08506
IPIIPI00004425   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZP6
IntAct (EBI)Q9NZP6
FunCoupENSG00000185823
BioGRIDNPAP1
STRING (EMBL)NPAP1
ZODIACNPAP1
Ontologies - Pathways
QuickGOQ9NZP6
Ontology : AmiGOmolecular_function  nuclear inner membrane  nucleoplasm  multicellular organismal development  spermatogenesis  cell differentiation  extracellular exosome  
Ontology : EGO-EBImolecular_function  nuclear inner membrane  nucleoplasm  multicellular organismal development  spermatogenesis  cell differentiation  extracellular exosome  
NDEx NetworkNPAP1
Atlas of Cancer Signalling NetworkNPAP1
Wikipedia pathwaysNPAP1
Orthology - Evolution
OrthoDB23742
GeneTree (enSembl)ENSG00000185823
Phylogenetic Trees/Animal Genes : TreeFamNPAP1
HOVERGENQ9NZP6
HOGENOMQ9NZP6
Homologs : HomoloGeneNPAP1
Homology/Alignments : Family Browser (UCSC)NPAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPAP1
dbVarNPAP1
ClinVarNPAP1
1000_GenomesNPAP1 
Exome Variant ServerNPAP1
ExAC (Exome Aggregation Consortium)NPAP1 (select the gene name)
Genetic variants : HAPMAP23742
Genomic Variants (DGV)NPAP1 [DGVbeta]
DECIPHER (Syndromes)15:24920541-24928593  ENSG00000185823
CONAN: Copy Number AnalysisNPAP1 
Mutations
ICGC Data PortalNPAP1 
TCGA Data PortalNPAP1 
Broad Tumor PortalNPAP1
OASIS PortalNPAP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPAP1
BioMutasearch NPAP1
DgiDB (Drug Gene Interaction Database)NPAP1
DoCM (Curated mutations)NPAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPAP1 (select a term)
intoGenNPAP1
Cancer3DNPAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM176270    610922   
Orphanet
MedgenNPAP1
Genetic Testing Registry NPAP1
NextProtQ9NZP6 [Medical]
TSGene23742
GENETestsNPAP1
Huge Navigator NPAP1 [HugePedia]
snp3D : Map Gene to Disease23742
BioCentury BCIQNPAP1
ClinGenNPAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23742
Chemical/Pharm GKB GenePA25519
Clinical trialNPAP1
Miscellaneous
canSAR (ICR)NPAP1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPAP1
EVEXNPAP1
GoPubMedNPAP1
iHOPNPAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:11 CET 2017

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