| Nomenclature |
|---|
| HGNC (Hugo) | NPAS4 18983 |
| Cards |
|---|
| Entrez_Gene (NCBI) | NPAS4 neuronal PAS domain protein 4 |
| Aliases | Le-PAS; NXF; PASD10; bHLHe79 |
| GeneCards (Weizmann) | NPAS4 |
| Ensembl hg19 (Hinxton) | ENSG00000174576 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000174576 [Gene_View] ENSG00000174576 [Sequence] chr11:66421004-66426706 [Contig_View] NPAS4 [Vega] |
| ICGC DataPortal | ENSG00000174576 |
| TCGA cBioPortal | NPAS4 |
| AceView (NCBI) | NPAS4 |
| Genatlas (Paris) | NPAS4 |
| SOURCE (Princeton) | NPAS4 |
| Genetics Home Reference (NIH) | NPAS4 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | NPAS4 - chr11:66421004-66426706 + 11q13.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | NPAS4 - 11q13.2 [Description] (hg19-Feb_2009) |
| GoldenPath | NPAS4 - 11q13.2 [CytoView hg19] NPAS4 - 11q13.2 [CytoView hg38] |
| ImmunoBase | ENSG00000174576 |
| genome Data Viewer NCBI | NPAS4 [Mapview hg19] |
| OMIM | 608554 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB049469 AK094025 AK096253 BC105001 BC105003 |
| RefSeq transcript (Entrez) | NM_001318804 NM_178864 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | NPAS4 |
| Alternative Splicing Gallery | ENSG00000174576 |
| Gene Expression | NPAS4 [ NCBI-GEO ] NPAS4 [ EBI - ARRAY_EXPRESS ]
NPAS4 [ SEEK ] NPAS4 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | NPAS4 [ Firebrowse - Broad ] |
| Genevisible | Expression of NPAS4 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 266743 |
| GTEX Portal (Tissue expression) | NPAS4 |
| Human Protein Atlas | ENSG00000174576-NPAS4 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q8IUM7 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q8IUM7 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q8IUM7 |
| Splice isoforms : SwissVar | Q8IUM7 |
| PhosPhoSitePlus | Q8IUM7 |
| Domaine pattern : Prosite (Expaxy) | BHLH (PS50888) PAS (PS50112) |
| Domains : Interpro (EBI) | bHLH_dom PAS PAS-like_dom_sf PAS_fold_3 |
| Domain families : Pfam (Sanger) | PAS_3 (PF08447) |
| Domain families : Pfam (NCBI) | pfam08447 |
| Domain families : Smart (EMBL) | PAS (SM00091) |
| Conserved Domain (NCBI) | NPAS4 |
| Blocks (Seattle) | NPAS4 |
| Superfamily | Q8IUM7 |
| Human Protein Atlas [tissue] | ENSG00000174576-NPAS4 [tissue] |
| Peptide Atlas | Q8IUM7 |
| HPRD | 12260 |
| IPI | IPI00216785 IPI00981383 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q8IUM7 |
| IntAct (EBI) | Q8IUM7 |
| BioGRID | NPAS4 |
| STRING (EMBL) | NPAS4 |
| ZODIAC | NPAS4 |
| Ontologies - Pathways |
|---|
| QuickGO | Q8IUM7 |
| Ontology : AmiGO | nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific protein binding nucleus transcription factor complex regulation of transcription by RNA polymerase II learning short-term memory long-term memory cell differentiation regulation of synaptic transmission, GABAergic social behavior positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II protein heterodimerization activity regulation of synaptic plasticity excitatory postsynaptic potential inhibitory postsynaptic potential cellular response to corticosterone stimulus postsynapse inhibitory synapse assembly |
| Ontology : EGO-EBI | nuclear chromatin RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific protein binding nucleus transcription factor complex regulation of transcription by RNA polymerase II learning short-term memory long-term memory cell differentiation regulation of synaptic transmission, GABAergic social behavior positive regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II protein heterodimerization activity regulation of synaptic plasticity excitatory postsynaptic potential inhibitory postsynaptic potential cellular response to corticosterone stimulus postsynapse inhibitory synapse assembly |
| NDEx Network | NPAS4 |
| Atlas of Cancer Signalling Network | NPAS4 |
| Wikipedia pathways | NPAS4 |
| Orthology - Evolution |
|---|
| OrthoDB | 266743 |
| GeneTree (enSembl) | ENSG00000174576 |
| Phylogenetic Trees/Animal Genes : TreeFam | NPAS4 |
| HOGENOM | Q8IUM7 |
| Homologs : HomoloGene | NPAS4 |
| Homology/Alignments : Family Browser (UCSC) | NPAS4 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | NPAS4 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | NPAS4 [hg38] |
| dbVar | NPAS4 |
| ClinVar | NPAS4 |
| Monarch | NPAS4 |
| 1000_Genomes | NPAS4 |
| Exome Variant Server | NPAS4 |
| GNOMAD Browser | ENSG00000174576 |
| Varsome Browser | NPAS4 |
| Genomic Variants (DGV) | NPAS4 [DGVbeta] |
| DECIPHER | NPAS4 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | NPAS4 |
| Mutations |
|---|
| ICGC Data Portal | NPAS4 |
| TCGA Data Portal | NPAS4 |
| Broad Tumor Portal | NPAS4 |
| OASIS Portal | NPAS4 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | NPAS4 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | NPAS4 |
| Mutations and Diseases : HGMD | NPAS4 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search NPAS4 |
| DgiDB (Drug Gene Interaction Database) | NPAS4 |
| DoCM (Curated mutations) | NPAS4 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | NPAS4 (select a term) |
| intoGen | NPAS4 |
| Cancer3D | NPAS4(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 608554 |
| Orphanet | |
| DisGeNET | NPAS4 |
| Medgen | NPAS4 |
| Genetic Testing Registry | NPAS4
|
| NextProt | Q8IUM7 [Medical] |
| GENETests | NPAS4 |
| Target Validation | NPAS4 |
| Huge Navigator |
NPAS4 [HugePedia] |
| ClinGen | NPAS4 |
| Clinical trials, drugs, therapy |
|---|
| MyCancerGenome | NPAS4 |
| Protein Interactions : CTD | |
| Pharm GKB Gene | PA142671254 |
| Clinical trial | NPAS4 |
| Miscellaneous |
|---|
| canSAR (ICR) | NPAS4 (select the gene name) |
| Harmonizome | NPAS4 |
| DataMed Index | NPAS4 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 11 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | NPAS4 |
| EVEX | NPAS4 |
| GoPubMed | NPAS4 |
