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NPAT (nuclear protein, coactivator of histone transcription)

Identity

Alias_namesnuclear protein
Alias_symbol (synonym)E14
p220
Other aliasE14/NPAT
HGNC (Hugo) NPAT
LocusID (NCBI) 4863
Atlas_Id 50920
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 108157215 and ends at 108222638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPAT   7896
Cards
Entrez_Gene (NCBI)NPAT  4863  nuclear protein, coactivator of histone transcription
AliasesE14; E14/NPAT; p220
GeneCards (Weizmann)NPAT
Ensembl hg19 (Hinxton)ENSG00000149308 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149308 [Gene_View]  chr11:108157215-108222638 [Contig_View]  NPAT [Vega]
ICGC DataPortalENSG00000149308
TCGA cBioPortalNPAT
AceView (NCBI)NPAT
Genatlas (Paris)NPAT
WikiGenes4863
SOURCE (Princeton)NPAT
Genetics Home Reference (NIH)NPAT
Genomic and cartography
GoldenPath hg38 (UCSC)NPAT  -     chr11:108157215-108222638 -  11q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPAT  -     11q22.3   [Description]    (hg19-Feb_2009)
EnsemblNPAT - 11q22.3 [CytoView hg19]  NPAT - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBINPAT [Mapview hg19]  NPAT [Mapview hg38]
OMIM601448   
Gene and transcription
Genbank (Entrez)AK290020 AK291687 AK301256 BC040356 BC050561
RefSeq transcript (Entrez)NM_001321307 NM_002519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPAT
Cluster EST : UnigeneHs.171061 [ NCBI ]
CGAP (NCI)Hs.171061
Alternative Splicing GalleryENSG00000149308
Gene ExpressionNPAT [ NCBI-GEO ]   NPAT [ EBI - ARRAY_EXPRESS ]   NPAT [ SEEK ]   NPAT [ MEM ]
Gene Expression Viewer (FireBrowse)NPAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4863
GTEX Portal (Tissue expression)NPAT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14207   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14207  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14207
Splice isoforms : SwissVarQ14207
PhosPhoSitePlusQ14207
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)LisH    NPAT_C   
Domain families : Pfam (Sanger)NPAT_C (PF15712)   
Domain families : Pfam (NCBI)pfam15712   
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)NPAT
DMDM Disease mutations4863
Blocks (Seattle)NPAT
SuperfamilyQ14207
Human Protein AtlasENSG00000149308
Peptide AtlasQ14207
HPRD03266
IPIIPI00290547   IPI00976288   IPI00974459   
Protein Interaction databases
DIP (DOE-UCLA)Q14207
IntAct (EBI)Q14207
FunCoupENSG00000149308
BioGRIDNPAT
STRING (EMBL)NPAT
ZODIACNPAT
Ontologies - Pathways
QuickGOQ14207
Ontology : AmiGOregulation of transcription involved in G1/S transition of mitotic cell cycle  transcription coactivator activity  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  protein C-terminus binding  regulation of gene expression  Cajal body  positive regulation of transcription, DNA-templated  protein N-terminus binding  Gemini of coiled bodies  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIregulation of transcription involved in G1/S transition of mitotic cell cycle  transcription coactivator activity  transcription coactivator activity  transcription corepressor activity  protein binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  protein C-terminus binding  regulation of gene expression  Cajal body  positive regulation of transcription, DNA-templated  protein N-terminus binding  Gemini of coiled bodies  negative regulation of nucleic acid-templated transcription  
NDEx NetworkNPAT
Atlas of Cancer Signalling NetworkNPAT
Wikipedia pathwaysNPAT
Orthology - Evolution
OrthoDB4863
GeneTree (enSembl)ENSG00000149308
Phylogenetic Trees/Animal Genes : TreeFamNPAT
HOVERGENQ14207
HOGENOMQ14207
Homologs : HomoloGeneNPAT
Homology/Alignments : Family Browser (UCSC)NPAT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPAT
dbVarNPAT
ClinVarNPAT
1000_GenomesNPAT 
Exome Variant ServerNPAT
ExAC (Exome Aggregation Consortium)NPAT (select the gene name)
Genetic variants : HAPMAP4863
Genomic Variants (DGV)NPAT [DGVbeta]
DECIPHERNPAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPAT 
Mutations
ICGC Data PortalNPAT 
TCGA Data PortalNPAT 
Broad Tumor PortalNPAT
OASIS PortalNPAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPAT
DgiDB (Drug Gene Interaction Database)NPAT
DoCM (Curated mutations)NPAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPAT (select a term)
intoGenNPAT
Cancer3DNPAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601448   
Orphanet
MedgenNPAT
Genetic Testing Registry NPAT
NextProtQ14207 [Medical]
TSGene4863
GENETestsNPAT
Target ValidationNPAT
Huge Navigator NPAT [HugePedia]
snp3D : Map Gene to Disease4863
BioCentury BCIQNPAT
ClinGenNPAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4863
Chemical/Pharm GKB GenePA31697
Clinical trialNPAT
Miscellaneous
canSAR (ICR)NPAT (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPAT
EVEXNPAT
GoPubMedNPAT
iHOPNPAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:09:19 CEST 2017

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