Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NPBWR2 (neuropeptides B and W receptor 2)

Identity

Alias_namesGPR8
G protein-coupled receptor 8
Other alias
HGNC (Hugo) NPBWR2
LocusID (NCBI) 2832
Atlas_Id 70916
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 64105830 and ends at 64106831 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPBWR2   4530
Cards
Entrez_Gene (NCBI)NPBWR2  2832  neuropeptides B and W receptor 2
AliasesGPR8
GeneCards (Weizmann)NPBWR2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:64105830-64106831 [Contig_View]  NPBWR2 [Vega]
TCGA cBioPortalNPBWR2
AceView (NCBI)NPBWR2
Genatlas (Paris)NPBWR2
WikiGenes2832
SOURCE (Princeton)NPBWR2
Genetics Home Reference (NIH)NPBWR2
Genomic and cartography
GoldenPath hg38 (UCSC)NPBWR2  -     chr20:64105830-64106831 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPBWR2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblNPBWR2 - 20q13.33 [CytoView hg19]  NPBWR2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBINPBWR2 [Mapview hg19]  NPBWR2 [Mapview hg38]
OMIM600731   
Gene and transcription
Genbank (Entrez)BC067481 BC067482 BC067483 HQ447590
RefSeq transcript (Entrez)NM_005286
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_187624
Consensus coding sequences : CCDS (NCBI)NPBWR2
Cluster EST : UnigeneHs.248118 [ NCBI ]
CGAP (NCI)Hs.248118
Gene ExpressionNPBWR2 [ NCBI-GEO ]   NPBWR2 [ EBI - ARRAY_EXPRESS ]   NPBWR2 [ SEEK ]   NPBWR2 [ MEM ]
Gene Expression Viewer (FireBrowse)NPBWR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2832
GTEX Portal (Tissue expression)NPBWR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48146   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48146  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48146
Splice isoforms : SwissVarP48146
PhosPhoSitePlusP48146
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Neuropept_B/W_rcpt    NPBW2   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)NPBWR2
DMDM Disease mutations2832
Blocks (Seattle)NPBWR2
SuperfamilyP48146
Peptide AtlasP48146
HPRD02841
IPIIPI00008162   
Protein Interaction databases
DIP (DOE-UCLA)P48146
IntAct (EBI)P48146
BioGRIDNPBWR2
STRING (EMBL)NPBWR2
ZODIACNPBWR2
Ontologies - Pathways
QuickGOP48146
Ontology : AmiGOopioid receptor activity  protein binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  neuropeptide signaling pathway  chemical synaptic transmission  neuropeptide receptor activity  integral component of membrane  opioid receptor signaling pathway  neuropeptide binding  neuron projection  
Ontology : EGO-EBIopioid receptor activity  protein binding  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  neuropeptide signaling pathway  chemical synaptic transmission  neuropeptide receptor activity  integral component of membrane  opioid receptor signaling pathway  neuropeptide binding  neuron projection  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkNPBWR2
Atlas of Cancer Signalling NetworkNPBWR2
Wikipedia pathwaysNPBWR2
Orthology - Evolution
OrthoDB2832
Phylogenetic Trees/Animal Genes : TreeFamNPBWR2
HOVERGENP48146
HOGENOMP48146
Homologs : HomoloGeneNPBWR2
Homology/Alignments : Family Browser (UCSC)NPBWR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPBWR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPBWR2
dbVarNPBWR2
ClinVarNPBWR2
1000_GenomesNPBWR2 
Exome Variant ServerNPBWR2
ExAC (Exome Aggregation Consortium)NPBWR2 (select the gene name)
Genetic variants : HAPMAP2832
Genomic Variants (DGV)NPBWR2 [DGVbeta]
DECIPHERNPBWR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPBWR2 
Mutations
ICGC Data PortalNPBWR2 
TCGA Data PortalNPBWR2 
Broad Tumor PortalNPBWR2
OASIS PortalNPBWR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPBWR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPBWR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPBWR2
DgiDB (Drug Gene Interaction Database)NPBWR2
DoCM (Curated mutations)NPBWR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPBWR2 (select a term)
intoGenNPBWR2
Cancer3DNPBWR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600731   
Orphanet
MedgenNPBWR2
Genetic Testing Registry NPBWR2
NextProtP48146 [Medical]
TSGene2832
GENETestsNPBWR2
Target ValidationNPBWR2
Huge Navigator NPBWR2 [HugePedia]
snp3D : Map Gene to Disease2832
BioCentury BCIQNPBWR2
ClinGenNPBWR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2832
Chemical/Pharm GKB GenePA28923
Clinical trialNPBWR2
Miscellaneous
canSAR (ICR)NPBWR2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPBWR2
EVEXNPBWR2
GoPubMedNPBWR2
iHOPNPBWR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:32:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.