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NPCDR1 (nasopharyngeal carcinoma, down-regulated 1)

Identity

Alias_symbol (synonym)NPCR
Other aliasNPCDRG
HGNC (Hugo) NPCDR1
LocusID (NCBI) 246734
Atlas_Id 41565
Location 3p14.2  [Link to chromosome band 3p14]
Location_base_pair Starts at 59956576 and ends at 59958982 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NPCDR1   13392
Cards
Entrez_Gene (NCBI)NPCDR1  246734  nasopharyngeal carcinoma, down-regulated 1
AliasesNPCDRG; NPCR
GeneCards (Weizmann)NPCDR1
Ensembl hg19 (Hinxton) [Gene_View]  chr3:59956576-59958982 [Contig_View]  NPCDR1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:59956576-59958982 [Contig_View]  NPCDR1 [Vega]
TCGA cBioPortalNPCDR1
AceView (NCBI)NPCDR1
Genatlas (Paris)NPCDR1
WikiGenes246734
SOURCE (Princeton)NPCDR1
Genetics Home Reference (NIH)NPCDR1
Genomic and cartography
GoldenPath hg19 (UCSC)NPCDR1  -     chr3:59956576-59958982 -  3p14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPCDR1  -     3p14.2   [Description]    (hg38-Dec_2013)
EnsemblNPCDR1 - 3p14.2 [CytoView hg19]  NPCDR1 - 3p14.2 [CytoView hg38]
Mapping of homologs : NCBINPCDR1 [Mapview hg19]  NPCDR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF134979 AF156973
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPCDR1
Cluster EST : UnigeneHs.683659 [ NCBI ]
CGAP (NCI)Hs.683659
Gene ExpressionNPCDR1 [ NCBI-GEO ]   NPCDR1 [ EBI - ARRAY_EXPRESS ]   NPCDR1 [ SEEK ]   NPCDR1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPCDR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)246734
GTEX Portal (Tissue expression)NPCDR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY65
Splice isoforms : SwissVarQ9BY65
PhosPhoSitePlusQ9BY65
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPCDR1
DMDM Disease mutations246734
Blocks (Seattle)NPCDR1
SuperfamilyQ9BY65
Peptide AtlasQ9BY65
IPIIPI00169436   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY65
IntAct (EBI)Q9BY65
BioGRIDNPCDR1
STRING (EMBL)NPCDR1
ZODIACNPCDR1
Ontologies - Pathways
QuickGOQ9BY65
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNPCDR1
Atlas of Cancer Signalling NetworkNPCDR1
Wikipedia pathwaysNPCDR1
Orthology - Evolution
OrthoDB246734
Phylogenetic Trees/Animal Genes : TreeFamNPCDR1
HOVERGENQ9BY65
HOGENOMQ9BY65
Homologs : HomoloGeneNPCDR1
Homology/Alignments : Family Browser (UCSC)NPCDR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPCDR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPCDR1
dbVarNPCDR1
ClinVarNPCDR1
1000_GenomesNPCDR1 
Exome Variant ServerNPCDR1
ExAC (Exome Aggregation Consortium)NPCDR1 (select the gene name)
Genetic variants : HAPMAP246734
Genomic Variants (DGV)NPCDR1 [DGVbeta]
DECIPHER (Syndromes)3:59956576-59958982  
CONAN: Copy Number AnalysisNPCDR1 
Mutations
ICGC Data PortalNPCDR1 
TCGA Data PortalNPCDR1 
Broad Tumor PortalNPCDR1
OASIS PortalNPCDR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPCDR1
BioMutasearch NPCDR1
DgiDB (Drug Gene Interaction Database)NPCDR1
DoCM (Curated mutations)NPCDR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPCDR1 (select a term)
intoGenNPCDR1
Cancer3DNPCDR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPCDR1
Genetic Testing Registry NPCDR1
NextProtQ9BY65 [Medical]
TSGene246734
GENETestsNPCDR1
Huge Navigator NPCDR1 [HugePedia]
snp3D : Map Gene to Disease246734
BioCentury BCIQNPCDR1
ClinGenNPCDR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD246734
Chemical/Pharm GKB GenePA134920044
Clinical trialNPCDR1
Miscellaneous
canSAR (ICR)NPCDR1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPCDR1
EVEXNPCDR1
GoPubMedNPCDR1
iHOPNPCDR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:12 CET 2017

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