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NPDC1 (neural proliferation, differentiation and control, 1)

Identity

Alias_symbol (synonym)DKFZp586J0523
CAB-
CAB1
Other aliasCAB
CAB-1
NPDC-1
HGNC (Hugo) NPDC1
LocusID (NCBI) 56654
Atlas_Id 41566
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139933909 and ends at 139940676 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EDF1 (9q34.3) / NPDC1 (9q34.3)MINOS1 (1p36.13) / NPDC1 (9q34.3)PER1 (17p13.1) / NPDC1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPDC1   7899
Cards
Entrez_Gene (NCBI)NPDC1  56654  neural proliferation, differentiation and control, 1
AliasesCAB; CAB-; CAB-1; CAB1; 
NPDC-1
GeneCards (Weizmann)NPDC1
Ensembl hg19 (Hinxton)ENSG00000107281 [Gene_View]  chr9:139933909-139940676 [Contig_View]  NPDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000107281 [Gene_View]  chr9:139933909-139940676 [Contig_View]  NPDC1 [Vega]
ICGC DataPortalENSG00000107281
TCGA cBioPortalNPDC1
AceView (NCBI)NPDC1
Genatlas (Paris)NPDC1
WikiGenes56654
SOURCE (Princeton)NPDC1
Genetics Home Reference (NIH)NPDC1
Genomic and cartography
GoldenPath hg19 (UCSC)NPDC1  -     chr9:139933909-139940676 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPDC1  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblNPDC1 - 9q34.3 [CytoView hg19]  NPDC1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBINPDC1 [Mapview hg19]  NPDC1 [Mapview hg38]
OMIM605798   
Gene and transcription
Genbank (Entrez)AF272357 AF283247 AF285836 AF327349 AK054950
RefSeq transcript (Entrez)NM_015392
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)NPDC1
Cluster EST : UnigeneHs.719906 [ NCBI ]
CGAP (NCI)Hs.719906
Alternative Splicing GalleryENSG00000107281
Gene ExpressionNPDC1 [ NCBI-GEO ]   NPDC1 [ EBI - ARRAY_EXPRESS ]   NPDC1 [ SEEK ]   NPDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56654
GTEX Portal (Tissue expression)NPDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQX5
Splice isoforms : SwissVarQ9NQX5
PhosPhoSitePlusQ9NQX5
Domains : Interpro (EBI)NPDC1   
Domain families : Pfam (Sanger)NPDC1 (PF06809)   
Domain families : Pfam (NCBI)pfam06809   
Conserved Domain (NCBI)NPDC1
DMDM Disease mutations56654
Blocks (Seattle)NPDC1
SuperfamilyQ9NQX5
Human Protein AtlasENSG00000107281
Peptide AtlasQ9NQX5
HPRD12048
IPIIPI00299699   IPI00514438   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQX5
IntAct (EBI)Q9NQX5
FunCoupENSG00000107281
BioGRIDNPDC1
STRING (EMBL)NPDC1
ZODIACNPDC1
Ontologies - Pathways
QuickGOQ9NQX5
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkNPDC1
Atlas of Cancer Signalling NetworkNPDC1
Wikipedia pathwaysNPDC1
Orthology - Evolution
OrthoDB56654
GeneTree (enSembl)ENSG00000107281
Phylogenetic Trees/Animal Genes : TreeFamNPDC1
HOVERGENQ9NQX5
HOGENOMQ9NQX5
Homologs : HomoloGeneNPDC1
Homology/Alignments : Family Browser (UCSC)NPDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPDC1
dbVarNPDC1
ClinVarNPDC1
1000_GenomesNPDC1 
Exome Variant ServerNPDC1
ExAC (Exome Aggregation Consortium)NPDC1 (select the gene name)
Genetic variants : HAPMAP56654
Genomic Variants (DGV)NPDC1 [DGVbeta]
DECIPHER (Syndromes)9:139933909-139940676  ENSG00000107281
CONAN: Copy Number AnalysisNPDC1 
Mutations
ICGC Data PortalNPDC1 
TCGA Data PortalNPDC1 
Broad Tumor PortalNPDC1
OASIS PortalNPDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPDC1
DgiDB (Drug Gene Interaction Database)NPDC1
DoCM (Curated mutations)NPDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPDC1 (select a term)
intoGenNPDC1
Cancer3DNPDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605798   
Orphanet
MedgenNPDC1
Genetic Testing Registry NPDC1
NextProtQ9NQX5 [Medical]
TSGene56654
GENETestsNPDC1
Huge Navigator NPDC1 [HugePedia]
snp3D : Map Gene to Disease56654
BioCentury BCIQNPDC1
ClinGenNPDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56654
Chemical/Pharm GKB GenePA31701
Clinical trialNPDC1
Miscellaneous
canSAR (ICR)NPDC1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPDC1
EVEXNPDC1
GoPubMedNPDC1
iHOPNPDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:34 CEST 2017

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