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NPEPL1 (aminopeptidase-like 1)

Identity

Alias_symbol (synonym)FLJ11583
bA261P9.2
Other alias
HGNC (Hugo) NPEPL1
LocusID (NCBI) 79716
Atlas_Id 70919
Location 20q13.32  [Link to chromosome band 20q13]
Location_base_pair Starts at 58689131 and ends at 58715844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NPEPL1 (20q13.32) / DSN1 (20q11.23)NPEPL1 (20q13.32) / NPEPL1 (20q13.32)NPEPL1 (20q13.32) / RBM15B (3p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPEPL1   16244
Cards
Entrez_Gene (NCBI)NPEPL1  79716  aminopeptidase-like 1
AliasesbA261P9.2
GeneCards (Weizmann)NPEPL1
Ensembl hg19 (Hinxton)ENSG00000215440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215440 [Gene_View]  chr20:58689131-58715844 [Contig_View]  NPEPL1 [Vega]
ICGC DataPortalENSG00000215440
TCGA cBioPortalNPEPL1
AceView (NCBI)NPEPL1
Genatlas (Paris)NPEPL1
WikiGenes79716
SOURCE (Princeton)NPEPL1
Genetics Home Reference (NIH)NPEPL1
Genomic and cartography
GoldenPath hg38 (UCSC)NPEPL1  -     chr20:58689131-58715844 +  20q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPEPL1  -     20q13.32   [Description]    (hg19-Feb_2009)
EnsemblNPEPL1 - 20q13.32 [CytoView hg19]  NPEPL1 - 20q13.32 [CytoView hg38]
Mapping of homologs : NCBINPEPL1 [Mapview hg19]  NPEPL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075854 AK021645 AK096873 AK124479 AK126390
RefSeq transcript (Entrez)NM_001204872 NM_001204873 NM_024663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPEPL1
Cluster EST : UnigeneHs.654868 [ NCBI ]
CGAP (NCI)Hs.654868
Alternative Splicing GalleryENSG00000215440
Gene ExpressionNPEPL1 [ NCBI-GEO ]   NPEPL1 [ EBI - ARRAY_EXPRESS ]   NPEPL1 [ SEEK ]   NPEPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPEPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79716
GTEX Portal (Tissue expression)NPEPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDH3
Splice isoforms : SwissVarQ8NDH3
Catalytic activity : Enzyme3.4.11.- [ Enzyme-Expasy ]   3.4.11.-3.4.11.- [ IntEnz-EBI ]   3.4.11.- [ BRENDA ]   3.4.11.- [ KEGG ]   
PhosPhoSitePlusQ8NDH3
Domaine pattern : Prosite (Expaxy)CYTOSOL_AP (PS00631)   
Domains : Interpro (EBI)Leucine_aapep/pepB    Peptidase_M17_C   
Domain families : Pfam (Sanger)Peptidase_M17 (PF00883)   
Domain families : Pfam (NCBI)pfam00883   
Conserved Domain (NCBI)NPEPL1
DMDM Disease mutations79716
Blocks (Seattle)NPEPL1
SuperfamilyQ8NDH3
Human Protein AtlasENSG00000215440
Peptide AtlasQ8NDH3
HPRD07496
IPIIPI00100292   IPI00252412   IPI00168532   IPI00913928   IPI00743707   IPI00984883   IPI00981061   IPI00985212   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDH3
IntAct (EBI)Q8NDH3
FunCoupENSG00000215440
BioGRIDNPEPL1
STRING (EMBL)NPEPL1
ZODIACNPEPL1
Ontologies - Pathways
QuickGOQ8NDH3
Ontology : AmiGOaminopeptidase activity  nucleus  cytoplasm  proteolysis  metalloexopeptidase activity  manganese ion binding  
Ontology : EGO-EBIaminopeptidase activity  nucleus  cytoplasm  proteolysis  metalloexopeptidase activity  manganese ion binding  
NDEx NetworkNPEPL1
Atlas of Cancer Signalling NetworkNPEPL1
Wikipedia pathwaysNPEPL1
Orthology - Evolution
OrthoDB79716
GeneTree (enSembl)ENSG00000215440
Phylogenetic Trees/Animal Genes : TreeFamNPEPL1
HOVERGENQ8NDH3
HOGENOMQ8NDH3
Homologs : HomoloGeneNPEPL1
Homology/Alignments : Family Browser (UCSC)NPEPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPEPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPEPL1
dbVarNPEPL1
ClinVarNPEPL1
1000_GenomesNPEPL1 
Exome Variant ServerNPEPL1
ExAC (Exome Aggregation Consortium)NPEPL1 (select the gene name)
Genetic variants : HAPMAP79716
Genomic Variants (DGV)NPEPL1 [DGVbeta]
DECIPHERNPEPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPEPL1 
Mutations
ICGC Data PortalNPEPL1 
TCGA Data PortalNPEPL1 
Broad Tumor PortalNPEPL1
OASIS PortalNPEPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPEPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPEPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPEPL1
DgiDB (Drug Gene Interaction Database)NPEPL1
DoCM (Curated mutations)NPEPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPEPL1 (select a term)
intoGenNPEPL1
Cancer3DNPEPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPEPL1
Genetic Testing Registry NPEPL1
NextProtQ8NDH3 [Medical]
TSGene79716
GENETestsNPEPL1
Target ValidationNPEPL1
Huge Navigator NPEPL1 [HugePedia]
snp3D : Map Gene to Disease79716
BioCentury BCIQNPEPL1
ClinGenNPEPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79716
Chemical/Pharm GKB GenePA31702
Clinical trialNPEPL1
Miscellaneous
canSAR (ICR)NPEPL1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPEPL1
EVEXNPEPL1
GoPubMedNPEPL1
iHOPNPEPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:13 CEST 2017

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