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NPFF (neuropeptide FF-amide peptide precursor)

Identity

Alias_symbol (synonym)FMRFAL
Other alias
HGNC (Hugo) NPFF
LocusID (NCBI) 8620
Atlas_Id 70920
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 53506688 and ends at 53507638 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPFF   7901
Cards
Entrez_Gene (NCBI)NPFF  8620  neuropeptide FF-amide peptide precursor
AliasesFMRFAL
GeneCards (Weizmann)NPFF
Ensembl hg19 (Hinxton)ENSG00000139574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139574 [Gene_View]  chr12:53506688-53507638 [Contig_View]  NPFF [Vega]
ICGC DataPortalENSG00000139574
TCGA cBioPortalNPFF
AceView (NCBI)NPFF
Genatlas (Paris)NPFF
WikiGenes8620
SOURCE (Princeton)NPFF
Genetics Home Reference (NIH)NPFF
Genomic and cartography
GoldenPath hg38 (UCSC)NPFF  -     chr12:53506688-53507638 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPFF  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblNPFF - 12q13.13 [CytoView hg19]  NPFF - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBINPFF [Mapview hg19]  NPFF [Mapview hg38]
OMIM604643   
Gene and transcription
Genbank (Entrez)AF005271 BC035758 BC104234 BC104235 BM314163
RefSeq transcript (Entrez)NM_001320296 NM_003717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPFF
Cluster EST : UnigeneHs.733076 [ NCBI ]
CGAP (NCI)Hs.733076
Alternative Splicing GalleryENSG00000139574
Gene ExpressionNPFF [ NCBI-GEO ]   NPFF [ EBI - ARRAY_EXPRESS ]   NPFF [ SEEK ]   NPFF [ MEM ]
Gene Expression Viewer (FireBrowse)NPFF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8620
GTEX Portal (Tissue expression)NPFF
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15130   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15130  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15130
Splice isoforms : SwissVarO15130
PhosPhoSitePlusO15130
Domains : Interpro (EBI)NPFF   
Domain families : Pfam (Sanger)NPFF (PF15085)   
Domain families : Pfam (NCBI)pfam15085   
Conserved Domain (NCBI)NPFF
DMDM Disease mutations8620
Blocks (Seattle)NPFF
SuperfamilyO15130
Human Protein AtlasENSG00000139574
Peptide AtlasO15130
HPRD06869
IPIIPI00005140   IPI00651658   
Protein Interaction databases
DIP (DOE-UCLA)O15130
IntAct (EBI)O15130
FunCoupENSG00000139574
BioGRIDNPFF
STRING (EMBL)NPFF
ZODIACNPFF
Ontologies - Pathways
QuickGOO15130
Ontology : AmiGOG-protein coupled receptor binding  acute inflammatory response to antigenic stimulus  regulation of membrane depolarization  receptor binding  neuropeptide hormone activity  extracellular region  extracellular space  positive regulation of cytosolic calcium ion concentration  neuropeptide signaling pathway  chemical synaptic transmission  negative regulation of heart rate  spinal cord development  vasopressin secretion  dendrite  vesicle  negative regulation of appetite  response to drug  perikaryon  response to morphine  axon terminus  positive regulation of blood pressure  negative regulation of insulin secretion  regulation of sensory perception of pain  excitatory postsynaptic potential  maternal process involved in female pregnancy  somatostatin secretion  postsynapse  
Ontology : EGO-EBIG-protein coupled receptor binding  acute inflammatory response to antigenic stimulus  regulation of membrane depolarization  receptor binding  neuropeptide hormone activity  extracellular region  extracellular space  positive regulation of cytosolic calcium ion concentration  neuropeptide signaling pathway  chemical synaptic transmission  negative regulation of heart rate  spinal cord development  vasopressin secretion  dendrite  vesicle  negative regulation of appetite  response to drug  perikaryon  response to morphine  axon terminus  positive regulation of blood pressure  negative regulation of insulin secretion  regulation of sensory perception of pain  excitatory postsynaptic potential  maternal process involved in female pregnancy  somatostatin secretion  postsynapse  
NDEx NetworkNPFF
Atlas of Cancer Signalling NetworkNPFF
Wikipedia pathwaysNPFF
Orthology - Evolution
OrthoDB8620
GeneTree (enSembl)ENSG00000139574
Phylogenetic Trees/Animal Genes : TreeFamNPFF
HOVERGENO15130
HOGENOMO15130
Homologs : HomoloGeneNPFF
Homology/Alignments : Family Browser (UCSC)NPFF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPFF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPFF
dbVarNPFF
ClinVarNPFF
1000_GenomesNPFF 
Exome Variant ServerNPFF
ExAC (Exome Aggregation Consortium)NPFF (select the gene name)
Genetic variants : HAPMAP8620
Genomic Variants (DGV)NPFF [DGVbeta]
DECIPHERNPFF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPFF 
Mutations
ICGC Data PortalNPFF 
TCGA Data PortalNPFF 
Broad Tumor PortalNPFF
OASIS PortalNPFF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPFF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPFF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPFF
DgiDB (Drug Gene Interaction Database)NPFF
DoCM (Curated mutations)NPFF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPFF (select a term)
intoGenNPFF
Cancer3DNPFF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604643   
Orphanet
MedgenNPFF
Genetic Testing Registry NPFF
NextProtO15130 [Medical]
TSGene8620
GENETestsNPFF
Target ValidationNPFF
Huge Navigator NPFF [HugePedia]
snp3D : Map Gene to Disease8620
BioCentury BCIQNPFF
ClinGenNPFF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8620
Chemical/Pharm GKB GenePA31704
Clinical trialNPFF
Miscellaneous
canSAR (ICR)NPFF (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPFF
EVEXNPFF
GoPubMedNPFF
iHOPNPFF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:56 CEST 2017

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