Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NPFFR1 (neuropeptide FF receptor 1)

Identity

Alias_namesGPR147
G protein-coupled receptor 147
Alias_symbol (synonym)OT7T022
NPFF1R1
Other aliasNPFF1
HGNC (Hugo) NPFFR1
LocusID (NCBI) 64106
Atlas_Id 70921
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 70254957 and ends at 70283694 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SAR1A (10q22.1) / NPFFR1 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPFFR1   17425
Cards
Entrez_Gene (NCBI)NPFFR1  64106  neuropeptide FF receptor 1
AliasesGPR147; NPFF1; NPFF1R1; OT7T022
GeneCards (Weizmann)NPFFR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:70254957-70283694 [Contig_View]  NPFFR1 [Vega]
TCGA cBioPortalNPFFR1
AceView (NCBI)NPFFR1
Genatlas (Paris)NPFFR1
WikiGenes64106
SOURCE (Princeton)NPFFR1
Genetics Home Reference (NIH)NPFFR1
Genomic and cartography
GoldenPath hg38 (UCSC)NPFFR1  -     chr10:70254957-70283694 -  10q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPFFR1  -     10q22.1   [Description]    (hg19-Feb_2009)
EnsemblNPFFR1 - 10q22.1 [CytoView hg19]  NPFFR1 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBINPFFR1 [Mapview hg19]  NPFFR1 [Mapview hg38]
OMIM607448   
Gene and transcription
Genbank (Entrez)AB040104 AF268898 AF330055 BC131580 EU432128
RefSeq transcript (Entrez)NM_022146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPFFR1
Cluster EST : UnigeneHs.302026 [ NCBI ]
CGAP (NCI)Hs.302026
Gene ExpressionNPFFR1 [ NCBI-GEO ]   NPFFR1 [ EBI - ARRAY_EXPRESS ]   NPFFR1 [ SEEK ]   NPFFR1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPFFR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64106
GTEX Portal (Tissue expression)NPFFR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZQ6
Splice isoforms : SwissVarQ9GZQ6
PhosPhoSitePlusQ9GZQ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    NPFF_rcpt    NPFF_rcpt_1   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)NPFFR1
DMDM Disease mutations64106
Blocks (Seattle)NPFFR1
SuperfamilyQ9GZQ6
Peptide AtlasQ9GZQ6
HPRD12120
IPIIPI00026347   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZQ6
IntAct (EBI)Q9GZQ6
BioGRIDNPFFR1
STRING (EMBL)NPFFR1
ZODIACNPFFR1
Ontologies - Pathways
QuickGOQ9GZQ6
Ontology : AmiGOG-protein coupled receptor activity  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  neuropeptide signaling pathway  biological_process  neuropeptide receptor activity  cellular response to hormone stimulus  peptide binding  response to peptide  
Ontology : EGO-EBIG-protein coupled receptor activity  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  neuropeptide signaling pathway  biological_process  neuropeptide receptor activity  cellular response to hormone stimulus  peptide binding  response to peptide  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkNPFFR1
Atlas of Cancer Signalling NetworkNPFFR1
Wikipedia pathwaysNPFFR1
Orthology - Evolution
OrthoDB64106
Phylogenetic Trees/Animal Genes : TreeFamNPFFR1
HOVERGENQ9GZQ6
HOGENOMQ9GZQ6
Homologs : HomoloGeneNPFFR1
Homology/Alignments : Family Browser (UCSC)NPFFR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPFFR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPFFR1
dbVarNPFFR1
ClinVarNPFFR1
1000_GenomesNPFFR1 
Exome Variant ServerNPFFR1
ExAC (Exome Aggregation Consortium)NPFFR1 (select the gene name)
Genetic variants : HAPMAP64106
Genomic Variants (DGV)NPFFR1 [DGVbeta]
DECIPHERNPFFR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPFFR1 
Mutations
ICGC Data PortalNPFFR1 
TCGA Data PortalNPFFR1 
Broad Tumor PortalNPFFR1
OASIS PortalNPFFR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPFFR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPFFR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPFFR1
DgiDB (Drug Gene Interaction Database)NPFFR1
DoCM (Curated mutations)NPFFR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPFFR1 (select a term)
intoGenNPFFR1
Cancer3DNPFFR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607448   
Orphanet
MedgenNPFFR1
Genetic Testing Registry NPFFR1
NextProtQ9GZQ6 [Medical]
TSGene64106
GENETestsNPFFR1
Huge Navigator NPFFR1 [HugePedia]
snp3D : Map Gene to Disease64106
BioCentury BCIQNPFFR1
ClinGenNPFFR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64106
Chemical/Pharm GKB GenePA134934991
Clinical trialNPFFR1
Miscellaneous
canSAR (ICR)NPFFR1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPFFR1
EVEXNPFFR1
GoPubMedNPFFR1
iHOPNPFFR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:45:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.