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NPIPA1 (nuclear pore complex interacting protein family member A1)

Identity

Alias_namesNPIP
nuclear pore complex interacting protein
nuclear pore complex interacting protein family, member A1
Alias_symbol (synonym)morpheus
Other aliasNPIPA
HGNC (Hugo) NPIPA1
LocusID (NCBI) 9284
Atlas_Id 70930
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 14937443 and ends at 14952060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATRN (20p13) / NPIPA1 (16p13.11)NPIPA1 (16p13.11) / APOL3 (22q12.3)NPIPA1 (16p13.11) / DDX46 (5q31.1)
NPIPA1 (16p13.11) / EHD2 (19q13.33)ZNF597 (16p13.3) / NPIPA1 (16p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA1   7909
Cards
Entrez_Gene (NCBI)NPIPA1  9284  nuclear pore complex interacting protein family member A1
AliasesNPIP; NPIPA; morpheus
GeneCards (Weizmann)NPIPA1
Ensembl hg19 (Hinxton)ENSG00000183426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183426 [Gene_View]  chr16:14937443-14952060 [Contig_View]  NPIPA1 [Vega]
ICGC DataPortalENSG00000183426
TCGA cBioPortalNPIPA1
AceView (NCBI)NPIPA1
Genatlas (Paris)NPIPA1
WikiGenes9284
SOURCE (Princeton)NPIPA1
Genetics Home Reference (NIH)NPIPA1
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA1  -     chr16:14937443-14952060 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA1  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA1 - 16p13.11 [CytoView hg19]  NPIPA1 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA1 [Mapview hg19]  NPIPA1 [Mapview hg38]
OMIM606406   
Gene and transcription
Genbank (Entrez)AF132984 AK294177 BC146422 BE253379 KF175165
RefSeq transcript (Entrez)NM_006985
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)NPIPA1
Cluster EST : UnigeneHs.676266 [ NCBI ]
CGAP (NCI)Hs.676266
Alternative Splicing GalleryENSG00000183426
Gene ExpressionNPIPA1 [ NCBI-GEO ]   NPIPA1 [ EBI - ARRAY_EXPRESS ]   NPIPA1 [ SEEK ]   NPIPA1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9284
GTEX Portal (Tissue expression)NPIPA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UND3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UND3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UND3
Splice isoforms : SwissVarQ9UND3
PhosPhoSitePlusQ9UND3
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA1
DMDM Disease mutations9284
Blocks (Seattle)NPIPA1
SuperfamilyQ9UND3
Human Protein AtlasENSG00000183426
Peptide AtlasQ9UND3
HPRD12101
IPIIPI00719338   IPI00910165   IPI00973850   IPI00984200   IPI01013220   IPI00979668   IPI01011674   
Protein Interaction databases
DIP (DOE-UCLA)Q9UND3
IntAct (EBI)Q9UND3
FunCoupENSG00000183426
BioGRIDNPIPA1
STRING (EMBL)NPIPA1
ZODIACNPIPA1
Ontologies - Pathways
QuickGOQ9UND3
Ontology : AmiGOnuclear pore  nucleoplasm  protein transport  nuclear membrane  mRNA transport  
Ontology : EGO-EBInuclear pore  nucleoplasm  protein transport  nuclear membrane  mRNA transport  
NDEx NetworkNPIPA1
Atlas of Cancer Signalling NetworkNPIPA1
Wikipedia pathwaysNPIPA1
Orthology - Evolution
OrthoDB9284
GeneTree (enSembl)ENSG00000183426
Phylogenetic Trees/Animal Genes : TreeFamNPIPA1
HOVERGENQ9UND3
HOGENOMQ9UND3
Homologs : HomoloGeneNPIPA1
Homology/Alignments : Family Browser (UCSC)NPIPA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA1
dbVarNPIPA1
ClinVarNPIPA1
1000_GenomesNPIPA1 
Exome Variant ServerNPIPA1
ExAC (Exome Aggregation Consortium)NPIPA1 (select the gene name)
Genetic variants : HAPMAP9284
Genomic Variants (DGV)NPIPA1 [DGVbeta]
DECIPHERNPIPA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA1 
Mutations
ICGC Data PortalNPIPA1 
TCGA Data PortalNPIPA1 
Broad Tumor PortalNPIPA1
OASIS PortalNPIPA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA1
BioMutasearch NPIPA1
DgiDB (Drug Gene Interaction Database)NPIPA1
DoCM (Curated mutations)NPIPA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA1 (select a term)
intoGenNPIPA1
Cancer3DNPIPA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606406   
Orphanet
MedgenNPIPA1
Genetic Testing Registry NPIPA1
NextProtQ9UND3 [Medical]
TSGene9284
GENETestsNPIPA1
Target ValidationNPIPA1
Huge Navigator NPIPA1 [HugePedia]
snp3D : Map Gene to Disease9284
BioCentury BCIQNPIPA1
ClinGenNPIPA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9284
Chemical/Pharm GKB GenePA31711
Clinical trialNPIPA1
Miscellaneous
canSAR (ICR)NPIPA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA1
EVEXNPIPA1
GoPubMedNPIPA1
iHOPNPIPA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:57 CEST 2017

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