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NPIPA2 (nuclear pore complex interacting protein family member A2)

Identity

Alias_namesnuclear pore complex interacting protein family, member A2
Other aliasNPIP
HGNC (Hugo) NPIPA2
LocusID (NCBI) 642799
Atlas_Id 70931
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 14711689 and ends at 14726328 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA2   41979
Cards
Entrez_Gene (NCBI)NPIPA2  642799  nuclear pore complex interacting protein family member A2
AliasesNPIP
GeneCards (Weizmann)NPIPA2
Ensembl hg19 (Hinxton)ENSG00000254852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254852 [Gene_View]  chr16:14711689-14726328 [Contig_View]  NPIPA2 [Vega]
ICGC DataPortalENSG00000254852
TCGA cBioPortalNPIPA2
AceView (NCBI)NPIPA2
Genatlas (Paris)NPIPA2
WikiGenes642799
SOURCE (Princeton)NPIPA2
Genetics Home Reference (NIH)NPIPA2
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA2  -     chr16:14711689-14726328 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA2  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA2 - 16p13.11 [CytoView hg19]  NPIPA2 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA2 [Mapview hg19]  NPIPA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)KF175213
RefSeq transcript (Entrez)NM_001277324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPA2
Alternative Splicing GalleryENSG00000254852
Gene ExpressionNPIPA2 [ NCBI-GEO ]   NPIPA2 [ EBI - ARRAY_EXPRESS ]   NPIPA2 [ SEEK ]   NPIPA2 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642799
GTEX Portal (Tissue expression)NPIPA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PIF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PIF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PIF3
Splice isoforms : SwissVarE9PIF3
PhosPhoSitePlusE9PIF3
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA2
DMDM Disease mutations642799
Blocks (Seattle)NPIPA2
SuperfamilyE9PIF3
Human Protein AtlasENSG00000254852
Peptide AtlasE9PIF3
IPIIPI00980413   
Protein Interaction databases
DIP (DOE-UCLA)E9PIF3
IntAct (EBI)E9PIF3
FunCoupENSG00000254852
BioGRIDNPIPA2
STRING (EMBL)NPIPA2
ZODIACNPIPA2
Ontologies - Pathways
QuickGOE9PIF3
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPA2
Atlas of Cancer Signalling NetworkNPIPA2
Wikipedia pathwaysNPIPA2
Orthology - Evolution
OrthoDB642799
GeneTree (enSembl)ENSG00000254852
Phylogenetic Trees/Animal Genes : TreeFamNPIPA2
HOVERGENE9PIF3
HOGENOME9PIF3
Homologs : HomoloGeneNPIPA2
Homology/Alignments : Family Browser (UCSC)NPIPA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA2
dbVarNPIPA2
ClinVarNPIPA2
1000_GenomesNPIPA2 
Exome Variant ServerNPIPA2
ExAC (Exome Aggregation Consortium)NPIPA2 (select the gene name)
Genetic variants : HAPMAP642799
Genomic Variants (DGV)NPIPA2 [DGVbeta]
DECIPHERNPIPA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA2 
Mutations
ICGC Data PortalNPIPA2 
TCGA Data PortalNPIPA2 
Broad Tumor PortalNPIPA2
OASIS PortalNPIPA2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA2
BioMutasearch NPIPA2
DgiDB (Drug Gene Interaction Database)NPIPA2
DoCM (Curated mutations)NPIPA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA2 (select a term)
intoGenNPIPA2
Cancer3DNPIPA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPA2
Genetic Testing Registry NPIPA2
NextProtE9PIF3 [Medical]
TSGene642799
GENETestsNPIPA2
Target ValidationNPIPA2
Huge Navigator NPIPA2 [HugePedia]
snp3D : Map Gene to Disease642799
BioCentury BCIQNPIPA2
ClinGenNPIPA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642799
Chemical/Pharm GKB GenePA166123710
Clinical trialNPIPA2
Miscellaneous
canSAR (ICR)NPIPA2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA2
EVEXNPIPA2
GoPubMedNPIPA2
iHOPNPIPA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:58 CEST 2017

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