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NPIPA3 (nuclear pore complex interacting protein family member A3)

Identity

Alias_namesnuclear pore complex interacting protein family, member A3
Other alias-
HGNC (Hugo) NPIPA3
LocusID (NCBI) 642778
Atlas_Id 70932
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 14711689 and ends at 14726338 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA3   41978
Cards
Entrez_Gene (NCBI)NPIPA3  642778  nuclear pore complex interacting protein family member A3
Aliases
GeneCards (Weizmann)NPIPA3
Ensembl hg19 (Hinxton)ENSG00000224712 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224712 [Gene_View]  chr16:14711689-14726338 [Contig_View]  NPIPA3 [Vega]
ICGC DataPortalENSG00000224712
TCGA cBioPortalNPIPA3
AceView (NCBI)NPIPA3
Genatlas (Paris)NPIPA3
WikiGenes642778
SOURCE (Princeton)NPIPA3
Genetics Home Reference (NIH)NPIPA3
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA3  -     chr16:14711689-14726338 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA3  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA3 - 16p13.11 [CytoView hg19]  NPIPA3 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA3 [Mapview hg19]  NPIPA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001277323
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)NPIPA3
Alternative Splicing GalleryENSG00000224712
Gene ExpressionNPIPA3 [ NCBI-GEO ]   NPIPA3 [ EBI - ARRAY_EXPRESS ]   NPIPA3 [ SEEK ]   NPIPA3 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642778
GTEX Portal (Tissue expression)NPIPA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtF8WFD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF8WFD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF8WFD2
Splice isoforms : SwissVarF8WFD2
PhosPhoSitePlusF8WFD2
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA3
DMDM Disease mutations642778
Blocks (Seattle)NPIPA3
SuperfamilyF8WFD2
Human Protein AtlasENSG00000224712
Peptide AtlasF8WFD2
IPIIPI00937648   
Protein Interaction databases
DIP (DOE-UCLA)F8WFD2
IntAct (EBI)F8WFD2
FunCoupENSG00000224712
BioGRIDNPIPA3
STRING (EMBL)NPIPA3
ZODIACNPIPA3
Ontologies - Pathways
QuickGOF8WFD2
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPA3
Atlas of Cancer Signalling NetworkNPIPA3
Wikipedia pathwaysNPIPA3
Orthology - Evolution
OrthoDB642778
GeneTree (enSembl)ENSG00000224712
Phylogenetic Trees/Animal Genes : TreeFamNPIPA3
HOVERGENF8WFD2
HOGENOMF8WFD2
Homologs : HomoloGeneNPIPA3
Homology/Alignments : Family Browser (UCSC)NPIPA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA3
dbVarNPIPA3
ClinVarNPIPA3
1000_GenomesNPIPA3 
Exome Variant ServerNPIPA3
ExAC (Exome Aggregation Consortium)NPIPA3 (select the gene name)
Genetic variants : HAPMAP642778
Genomic Variants (DGV)NPIPA3 [DGVbeta]
DECIPHERNPIPA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA3 
Mutations
ICGC Data PortalNPIPA3 
TCGA Data PortalNPIPA3 
Broad Tumor PortalNPIPA3
OASIS PortalNPIPA3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA3
BioMutasearch NPIPA3
DgiDB (Drug Gene Interaction Database)NPIPA3
DoCM (Curated mutations)NPIPA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA3 (select a term)
intoGenNPIPA3
Cancer3DNPIPA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPA3
Genetic Testing Registry NPIPA3
NextProtF8WFD2 [Medical]
TSGene642778
GENETestsNPIPA3
Target ValidationNPIPA3
Huge Navigator NPIPA3 [HugePedia]
snp3D : Map Gene to Disease642778
BioCentury BCIQNPIPA3
ClinGenNPIPA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642778
Chemical/Pharm GKB GenePA166123711
Clinical trialNPIPA3
Miscellaneous
canSAR (ICR)NPIPA3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA3
EVEXNPIPA3
GoPubMedNPIPA3
iHOPNPIPA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:58 CEST 2017

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