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NPIPA5 (nuclear pore complex interacting protein family member A5)

Identity

Alias_namesnuclear pore complex interacting protein family, member A5
Other aliasNPIP
HGNC (Hugo) NPIPA5
LocusID (NCBI) 100288332
Atlas_Id 70933
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15363624 and ends at 15378294 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA5   41980
Cards
Entrez_Gene (NCBI)NPIPA5  100288332  nuclear pore complex interacting protein family member A5
AliasesNPIP
GeneCards (Weizmann)NPIPA5
Ensembl hg19 (Hinxton)ENSG00000183793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183793 [Gene_View]  chr16:15363624-15378294 [Contig_View]  NPIPA5 [Vega]
ICGC DataPortalENSG00000183793
TCGA cBioPortalNPIPA5
AceView (NCBI)NPIPA5
Genatlas (Paris)NPIPA5
WikiGenes100288332
SOURCE (Princeton)NPIPA5
Genetics Home Reference (NIH)NPIPA5
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA5  -     chr16:15363624-15378294 -  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA5  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA5 - 16p13.11 [CytoView hg19]  NPIPA5 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA5 [Mapview hg19]  NPIPA5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA770415 CB053644 CB123100 EL734608 KF175168
RefSeq transcript (Entrez)NM_001277325 NM_001351200
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_054723 NT_187607
Consensus coding sequences : CCDS (NCBI)NPIPA5
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Alternative Splicing GalleryENSG00000183793
Gene ExpressionNPIPA5 [ NCBI-GEO ]   NPIPA5 [ EBI - ARRAY_EXPRESS ]   NPIPA5 [ SEEK ]   NPIPA5 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288332
GTEX Portal (Tissue expression)NPIPA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PKD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PKD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PKD4
Splice isoforms : SwissVarE9PKD4
PhosPhoSitePlusE9PKD4
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA5
DMDM Disease mutations100288332
Blocks (Seattle)NPIPA5
SuperfamilyE9PKD4
Human Protein AtlasENSG00000183793
Peptide AtlasE9PKD4
IPIIPI00848043   
Protein Interaction databases
DIP (DOE-UCLA)E9PKD4
IntAct (EBI)E9PKD4
FunCoupENSG00000183793
BioGRIDNPIPA5
STRING (EMBL)NPIPA5
ZODIACNPIPA5
Ontologies - Pathways
QuickGOE9PKD4
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPA5
Atlas of Cancer Signalling NetworkNPIPA5
Wikipedia pathwaysNPIPA5
Orthology - Evolution
OrthoDB100288332
GeneTree (enSembl)ENSG00000183793
Phylogenetic Trees/Animal Genes : TreeFamNPIPA5
HOVERGENE9PKD4
HOGENOME9PKD4
Homologs : HomoloGeneNPIPA5
Homology/Alignments : Family Browser (UCSC)NPIPA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA5
dbVarNPIPA5
ClinVarNPIPA5
1000_GenomesNPIPA5 
Exome Variant ServerNPIPA5
ExAC (Exome Aggregation Consortium)NPIPA5 (select the gene name)
Genetic variants : HAPMAP100288332
Genomic Variants (DGV)NPIPA5 [DGVbeta]
DECIPHERNPIPA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA5 
Mutations
ICGC Data PortalNPIPA5 
TCGA Data PortalNPIPA5 
Broad Tumor PortalNPIPA5
OASIS PortalNPIPA5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA5
BioMutasearch NPIPA5
DgiDB (Drug Gene Interaction Database)NPIPA5
DoCM (Curated mutations)NPIPA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA5 (select a term)
intoGenNPIPA5
Cancer3DNPIPA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPA5
Genetic Testing Registry NPIPA5
NextProtE9PKD4 [Medical]
TSGene100288332
GENETestsNPIPA5
Target ValidationNPIPA5
Huge Navigator NPIPA5 [HugePedia]
snp3D : Map Gene to Disease100288332
BioCentury BCIQNPIPA5
ClinGenNPIPA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288332
Chemical/Pharm GKB GenePA166123712
Clinical trialNPIPA5
Miscellaneous
canSAR (ICR)NPIPA5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA5
EVEXNPIPA5
GoPubMedNPIPA5
iHOPNPIPA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:32:58 CEST 2017

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