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NPIPA7 (nuclear pore complex interacting protein family member A7)

Identity

Alias_namesnuclear pore complex interacting protein family, member A7
Other alias-
HGNC (Hugo) NPIPA7
LocusID (NCBI) 101059938
Atlas_Id 70934
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 16335930 and ends at 16350608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA7   41982
Cards
Entrez_Gene (NCBI)NPIPA7  101059938  nuclear pore complex interacting protein family member A7
Aliases
GeneCards (Weizmann)NPIPA7
Ensembl hg19 (Hinxton)ENSG00000214967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214967 [Gene_View]  chr16:16335930-16350608 [Contig_View]  NPIPA7 [Vega]
ICGC DataPortalENSG00000214967
TCGA cBioPortalNPIPA7
AceView (NCBI)NPIPA7
Genatlas (Paris)NPIPA7
WikiGenes101059938
SOURCE (Princeton)NPIPA7
Genetics Home Reference (NIH)NPIPA7
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA7  -     chr16:16335930-16350608 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA7  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA7 - 16p13.11 [CytoView hg19]  NPIPA7 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA7 [Mapview hg19]  NPIPA7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI046418 BI832721
RefSeq transcript (Entrez)NM_001282507
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)NPIPA7
Cluster EST : UnigeneHs.636569 [ NCBI ]
CGAP (NCI)Hs.636569
Alternative Splicing GalleryENSG00000214967
Gene ExpressionNPIPA7 [ NCBI-GEO ]   NPIPA7 [ EBI - ARRAY_EXPRESS ]   NPIPA7 [ SEEK ]   NPIPA7 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101059938
GTEX Portal (Tissue expression)NPIPA7
Human Protein AtlasENSG00000214967-NPIPA7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PJI5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PJI5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PJI5
Splice isoforms : SwissVarE9PJI5
PhosPhoSitePlusE9PJI5
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA7
DMDM Disease mutations101059938
Blocks (Seattle)NPIPA7
SuperfamilyE9PJI5
Human Protein Atlas [tissue]ENSG00000214967-NPIPA7 [tissue]
Peptide AtlasE9PJI5
Protein Interaction databases
DIP (DOE-UCLA)E9PJI5
IntAct (EBI)E9PJI5
FunCoupENSG00000214967
BioGRIDNPIPA7
STRING (EMBL)NPIPA7
ZODIACNPIPA7
Ontologies - Pathways
QuickGOE9PJI5
Ontology : AmiGOprotein binding  nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  
NDEx NetworkNPIPA7
Atlas of Cancer Signalling NetworkNPIPA7
Wikipedia pathwaysNPIPA7
Orthology - Evolution
OrthoDB101059938
GeneTree (enSembl)ENSG00000214967
Phylogenetic Trees/Animal Genes : TreeFamNPIPA7
HOVERGENE9PJI5
HOGENOME9PJI5
Homologs : HomoloGeneNPIPA7
Homology/Alignments : Family Browser (UCSC)NPIPA7
Gene fusions - Rearrangements
Tumor Fusion PortalNPIPA7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA7
dbVarNPIPA7
ClinVarNPIPA7
1000_GenomesNPIPA7 
Exome Variant ServerNPIPA7
ExAC (Exome Aggregation Consortium)ENSG00000214967
GNOMAD BrowserENSG00000214967
Genetic variants : HAPMAP101059938
Genomic Variants (DGV)NPIPA7 [DGVbeta]
DECIPHERNPIPA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA7 
Mutations
ICGC Data PortalNPIPA7 
TCGA Data PortalNPIPA7 
Broad Tumor PortalNPIPA7
OASIS PortalNPIPA7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA7
BioMutasearch NPIPA7
DgiDB (Drug Gene Interaction Database)NPIPA7
DoCM (Curated mutations)NPIPA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA7 (select a term)
intoGenNPIPA7
Cancer3DNPIPA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPIPA7
MedgenNPIPA7
Genetic Testing Registry NPIPA7
NextProtE9PJI5 [Medical]
TSGene101059938
GENETestsNPIPA7
Target ValidationNPIPA7
Huge Navigator NPIPA7 [HugePedia]
snp3D : Map Gene to Disease101059938
BioCentury BCIQNPIPA7
ClinGenNPIPA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101059938
Chemical/Pharm GKB GenePA166123713
Clinical trialNPIPA7
Miscellaneous
canSAR (ICR)NPIPA7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA7
EVEXNPIPA7
GoPubMedNPIPA7
iHOPNPIPA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:01 CET 2017

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