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NPIPA8 (nuclear pore complex interacting protein family member A8)

Identity

Alias_namesnuclear pore complex interacting protein family, member A8
Alias_symbol (synonym)LCR16a9
Other alias
HGNC (Hugo) NPIPA8
LocusID (NCBI) 101059953
Atlas_Id 70935
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 16335930 and ends at 16350608 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPA8   41983
Cards
Entrez_Gene (NCBI)NPIPA8  101059953  nuclear pore complex interacting protein family member A8
AliasesLCR16a9
GeneCards (Weizmann)NPIPA8
Ensembl hg19 (Hinxton)ENSG00000214940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214940 [Gene_View]  chr16:16335930-16350608 [Contig_View]  NPIPA8 [Vega]
ICGC DataPortalENSG00000214940
TCGA cBioPortalNPIPA8
AceView (NCBI)NPIPA8
Genatlas (Paris)NPIPA8
WikiGenes101059953
SOURCE (Princeton)NPIPA8
Genetics Home Reference (NIH)NPIPA8
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPA8  -     chr16:16335930-16350608 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPA8  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblNPIPA8 - 16p13.11 [CytoView hg19]  NPIPA8 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBINPIPA8 [Mapview hg19]  NPIPA8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI679407 BE049529 BQ101079 BY996642
RefSeq transcript (Entrez)NM_001282511 NM_001349948 NM_001349949
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPA8
Cluster EST : UnigeneHs.720303 [ NCBI ]
CGAP (NCI)Hs.720303
Alternative Splicing GalleryENSG00000214940
Gene ExpressionNPIPA8 [ NCBI-GEO ]   NPIPA8 [ EBI - ARRAY_EXPRESS ]   NPIPA8 [ SEEK ]   NPIPA8 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPA8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101059953
GTEX Portal (Tissue expression)NPIPA8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DM63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DM63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DM63
Splice isoforms : SwissVarP0DM63
PhosPhoSitePlusP0DM63
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPA8
DMDM Disease mutations101059953
Blocks (Seattle)NPIPA8
SuperfamilyP0DM63
Human Protein AtlasENSG00000214940
Peptide AtlasP0DM63
Protein Interaction databases
DIP (DOE-UCLA)P0DM63
IntAct (EBI)P0DM63
FunCoupENSG00000214940
BioGRIDNPIPA8
STRING (EMBL)NPIPA8
ZODIACNPIPA8
Ontologies - Pathways
QuickGOP0DM63
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPA8
Atlas of Cancer Signalling NetworkNPIPA8
Wikipedia pathwaysNPIPA8
Orthology - Evolution
OrthoDB101059953
GeneTree (enSembl)ENSG00000214940
Phylogenetic Trees/Animal Genes : TreeFamNPIPA8
HOVERGENP0DM63
HOGENOMP0DM63
Homologs : HomoloGeneNPIPA8
Homology/Alignments : Family Browser (UCSC)NPIPA8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPA8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPA8
dbVarNPIPA8
ClinVarNPIPA8
1000_GenomesNPIPA8 
Exome Variant ServerNPIPA8
ExAC (Exome Aggregation Consortium)NPIPA8 (select the gene name)
Genetic variants : HAPMAP101059953
Genomic Variants (DGV)NPIPA8 [DGVbeta]
DECIPHERNPIPA8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPA8 
Mutations
ICGC Data PortalNPIPA8 
TCGA Data PortalNPIPA8 
Broad Tumor PortalNPIPA8
OASIS PortalNPIPA8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPA8
BioMutasearch NPIPA8
DgiDB (Drug Gene Interaction Database)NPIPA8
DoCM (Curated mutations)NPIPA8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPA8 (select a term)
intoGenNPIPA8
Cancer3DNPIPA8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPA8
Genetic Testing Registry NPIPA8
NextProtP0DM63 [Medical]
TSGene101059953
GENETestsNPIPA8
Target ValidationNPIPA8
Huge Navigator NPIPA8 [HugePedia]
snp3D : Map Gene to Disease101059953
BioCentury BCIQNPIPA8
ClinGenNPIPA8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101059953
Chemical/Pharm GKB GenePA166123714
Clinical trialNPIPA8
Miscellaneous
canSAR (ICR)NPIPA8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPA8
EVEXNPIPA8
GoPubMedNPIPA8
iHOPNPIPA8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:15 CEST 2017

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