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NPIPB11 (nuclear pore complex interacting protein family member B11)

Identity

Alias_namesnuclear pore complex interacting protein family, member B11
Other aliasNPIP
HGNC (Hugo) NPIPB11
LocusID (NCBI) 728888
Atlas_Id 70936
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29381318 and ends at 29403802 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB11   37453
Cards
Entrez_Gene (NCBI)NPIPB11  728888  nuclear pore complex interacting protein family member B11
AliasesNPIP
GeneCards (Weizmann)NPIPB11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:29381318-29403802 [Contig_View]  NPIPB11 [Vega]
TCGA cBioPortalNPIPB11
AceView (NCBI)NPIPB11
Genatlas (Paris)NPIPB11
WikiGenes728888
SOURCE (Princeton)NPIPB11
Genetics Home Reference (NIH)NPIPB11
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB11  -     chr16:29381318-29403802 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB11  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB11 - 16p11.2 [CytoView hg19]  NPIPB11 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB11 [Mapview hg19]  NPIPB11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF592449 KF175195 KF175204
RefSeq transcript (Entrez)NM_001310137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB11
Cluster EST : UnigeneHs.720286 [ NCBI ]
CGAP (NCI)Hs.720286
Gene ExpressionNPIPB11 [ NCBI-GEO ]   NPIPB11 [ EBI - ARRAY_EXPRESS ]   NPIPB11 [ SEEK ]   NPIPB11 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728888
GTEX Portal (Tissue expression)NPIPB11
Protein : pattern, domain, 3D structure
UniProt/SwissProtE5RHQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE5RHQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE5RHQ5
Splice isoforms : SwissVarE5RHQ5
PhosPhoSitePlusE5RHQ5
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB11
DMDM Disease mutations728888
Blocks (Seattle)NPIPB11
SuperfamilyE5RHQ5
Peptide AtlasE5RHQ5
IPIIPI00977485   IPI00936741   
Protein Interaction databases
DIP (DOE-UCLA)E5RHQ5
IntAct (EBI)E5RHQ5
BioGRIDNPIPB11
STRING (EMBL)NPIPB11
ZODIACNPIPB11
Ontologies - Pathways
QuickGOE5RHQ5
Ontology : AmiGOnucleoplasm  integral component of membrane  
Ontology : EGO-EBInucleoplasm  integral component of membrane  
NDEx NetworkNPIPB11
Atlas of Cancer Signalling NetworkNPIPB11
Wikipedia pathwaysNPIPB11
Orthology - Evolution
OrthoDB728888
Phylogenetic Trees/Animal Genes : TreeFamNPIPB11
HOVERGENE5RHQ5
HOGENOME5RHQ5
Homologs : HomoloGeneNPIPB11
Homology/Alignments : Family Browser (UCSC)NPIPB11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB11
dbVarNPIPB11
ClinVarNPIPB11
1000_GenomesNPIPB11 
Exome Variant ServerNPIPB11
ExAC (Exome Aggregation Consortium)NPIPB11 (select the gene name)
Genetic variants : HAPMAP728888
Genomic Variants (DGV)NPIPB11 [DGVbeta]
DECIPHERNPIPB11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB11 
Mutations
ICGC Data PortalNPIPB11 
TCGA Data PortalNPIPB11 
Broad Tumor PortalNPIPB11
OASIS PortalNPIPB11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB11
BioMutasearch NPIPB11
DgiDB (Drug Gene Interaction Database)NPIPB11
DoCM (Curated mutations)NPIPB11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB11 (select a term)
intoGenNPIPB11
Cancer3DNPIPB11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB11
Genetic Testing Registry NPIPB11
NextProtE5RHQ5 [Medical]
TSGene728888
GENETestsNPIPB11
Huge Navigator NPIPB11 [HugePedia]
snp3D : Map Gene to Disease728888
BioCentury BCIQNPIPB11
ClinGenNPIPB11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728888
Chemical/Pharm GKB GenePA166123720
Clinical trialNPIPB11
Miscellaneous
canSAR (ICR)NPIPB11 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB11
EVEXNPIPB11
GoPubMedNPIPB11
iHOPNPIPB11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:18 CEST 2017

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