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NPIPB15 (nuclear pore complex interacting protein family member B15)

Identity

Alias_namesNPIPL2
nuclear pore complex interacting protein-like 2
nuclear pore complex interacting protein family, member B15
Alias_symbol (synonym)LOC440348
Other aliasA-761H5.4
HGNC (Hugo) NPIPB15
LocusID (NCBI) 440348
Atlas_Id 70937
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74377952 and ends at 74392114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GTF2F2 (13q14.12) / NPIPB15 (16q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB15   34409
Cards
Entrez_Gene (NCBI)NPIPB15  440348  nuclear pore complex interacting protein family member B15
AliasesA-761H5.4; NPIPL2
GeneCards (Weizmann)NPIPB15
Ensembl hg19 (Hinxton)ENSG00000196436 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196436 [Gene_View]  chr16:74377952-74392114 [Contig_View]  NPIPB15 [Vega]
ICGC DataPortalENSG00000196436
TCGA cBioPortalNPIPB15
AceView (NCBI)NPIPB15
Genatlas (Paris)NPIPB15
WikiGenes440348
SOURCE (Princeton)NPIPB15
Genetics Home Reference (NIH)NPIPB15
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB15  -     chr16:74377952-74392114 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB15  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblNPIPB15 - 16q23.1 [CytoView hg19]  NPIPB15 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBINPIPB15 [Mapview hg19]  NPIPB15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC160029
RefSeq transcript (Entrez)NM_001018059 NM_001306094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB15
Alternative Splicing GalleryENSG00000196436
Gene ExpressionNPIPB15 [ NCBI-GEO ]   NPIPB15 [ EBI - ARRAY_EXPRESS ]   NPIPB15 [ SEEK ]   NPIPB15 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440348
GTEX Portal (Tissue expression)NPIPB15
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHN6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHN6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHN6
Splice isoforms : SwissVarA6NHN6
PhosPhoSitePlusA6NHN6
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB15
DMDM Disease mutations440348
Blocks (Seattle)NPIPB15
SuperfamilyA6NHN6
Human Protein AtlasENSG00000196436
Peptide AtlasA6NHN6
HPRD18636
IPIIPI00815728   IPI00967933   
Protein Interaction databases
DIP (DOE-UCLA)A6NHN6
IntAct (EBI)A6NHN6
FunCoupENSG00000196436
BioGRIDNPIPB15
STRING (EMBL)NPIPB15
ZODIACNPIPB15
Ontologies - Pathways
QuickGOA6NHN6
Ontology : AmiGOextracellular region  nucleoplasm  
Ontology : EGO-EBIextracellular region  nucleoplasm  
NDEx NetworkNPIPB15
Atlas of Cancer Signalling NetworkNPIPB15
Wikipedia pathwaysNPIPB15
Orthology - Evolution
OrthoDB440348
GeneTree (enSembl)ENSG00000196436
Phylogenetic Trees/Animal Genes : TreeFamNPIPB15
HOVERGENA6NHN6
HOGENOMA6NHN6
Homologs : HomoloGeneNPIPB15
Homology/Alignments : Family Browser (UCSC)NPIPB15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB15
dbVarNPIPB15
ClinVarNPIPB15
1000_GenomesNPIPB15 
Exome Variant ServerNPIPB15
ExAC (Exome Aggregation Consortium)NPIPB15 (select the gene name)
Genetic variants : HAPMAP440348
Genomic Variants (DGV)NPIPB15 [DGVbeta]
DECIPHERNPIPB15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB15 
Mutations
ICGC Data PortalNPIPB15 
TCGA Data PortalNPIPB15 
Broad Tumor PortalNPIPB15
OASIS PortalNPIPB15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB15
BioMutasearch NPIPB15
DgiDB (Drug Gene Interaction Database)NPIPB15
DoCM (Curated mutations)NPIPB15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB15 (select a term)
intoGenNPIPB15
Cancer3DNPIPB15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB15
Genetic Testing Registry NPIPB15
NextProtA6NHN6 [Medical]
TSGene440348
GENETestsNPIPB15
Huge Navigator NPIPB15 [HugePedia]
snp3D : Map Gene to Disease440348
BioCentury BCIQNPIPB15
ClinGenNPIPB15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440348
Chemical/Pharm GKB GenePA164724166
Clinical trialNPIPB15
Miscellaneous
canSAR (ICR)NPIPB15 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB15
EVEXNPIPB15
GoPubMedNPIPB15
iHOPNPIPB15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:19 CEST 2017

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