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NPIPB3 (nuclear pore complex interacting protein family member B3)

Identity

Alias_namesNPIPL3
nuclear pore complex interacting protein-like 3
nuclear pore complex interacting protein family, member B3
Alias_symbol (synonym)KIAA0220
Other aliasKIAA0220L
NPIP
NPIPB
NPIPB5
HGNC (Hugo) NPIPB3
LocusID (NCBI) 23117
Atlas_Id 70938
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21402134 and ends at 21425337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB3   28989
Cards
Entrez_Gene (NCBI)NPIPB3  23117  nuclear pore complex interacting protein family member B3
AliasesKIAA0220L; NPIP; NPIPB; NPIPB5; 
NPIPL3
GeneCards (Weizmann)NPIPB3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21402134-21425337 [Contig_View]  NPIPB3 [Vega]
TCGA cBioPortalNPIPB3
AceView (NCBI)NPIPB3
Genatlas (Paris)NPIPB3
WikiGenes23117
SOURCE (Princeton)NPIPB3
Genetics Home Reference (NIH)NPIPB3
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB3  -     chr16:21402134-21425337 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB3  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB3 - 16p12.2 [CytoView hg19]  NPIPB3 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB3 [Mapview hg19]  NPIPB3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA579987 AB209632 AK128772 AK294452 AK295170
RefSeq transcript (Entrez)NM_130464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB3
Cluster EST : UnigeneHs.720286 [ NCBI ]
CGAP (NCI)Hs.720286
Gene ExpressionNPIPB3 [ NCBI-GEO ]   NPIPB3 [ EBI - ARRAY_EXPRESS ]   NPIPB3 [ SEEK ]   NPIPB3 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23117
GTEX Portal (Tissue expression)NPIPB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92617   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92617  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92617
Splice isoforms : SwissVarQ92617
PhosPhoSitePlusQ92617
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB3
DMDM Disease mutations23117
Blocks (Seattle)NPIPB3
SuperfamilyQ92617
Peptide AtlasQ92617
IPIIPI00807454   IPI00807499   IPI00807565   IPI00807535   IPI00890704   IPI00909963   IPI00909840   IPI00940900   IPI00939266   IPI01008838   IPI00956264   IPI00937672   IPI00974385   IPI00983202   IPI01009683   IPI01011843   IPI01011142   IPI01019123   IPI01009923   IPI01010845   IPI01009515   IPI01013037   IPI01008923   IPI01011975   IPI01010556   
Protein Interaction databases
DIP (DOE-UCLA)Q92617
IntAct (EBI)Q92617
BioGRIDNPIPB3
STRING (EMBL)NPIPB3
ZODIACNPIPB3
Ontologies - Pathways
QuickGOQ92617
Ontology : AmiGOmolecular_function  cellular_component  nucleoplasm  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  cellular_component  nucleoplasm  biological_process  integral component of membrane  
NDEx NetworkNPIPB3
Atlas of Cancer Signalling NetworkNPIPB3
Wikipedia pathwaysNPIPB3
Orthology - Evolution
OrthoDB23117
Phylogenetic Trees/Animal Genes : TreeFamNPIPB3
HOVERGENQ92617
HOGENOMQ92617
Homologs : HomoloGeneNPIPB3
Homology/Alignments : Family Browser (UCSC)NPIPB3
Gene fusions - Rearrangements
Tumor Fusion PortalNPIPB3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB3
dbVarNPIPB3
ClinVarNPIPB3
1000_GenomesNPIPB3 
Exome Variant ServerNPIPB3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP23117
Genomic Variants (DGV)NPIPB3 [DGVbeta]
DECIPHERNPIPB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB3 
Mutations
ICGC Data PortalNPIPB3 
TCGA Data PortalNPIPB3 
Broad Tumor PortalNPIPB3
OASIS PortalNPIPB3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB3
BioMutasearch NPIPB3
DgiDB (Drug Gene Interaction Database)NPIPB3
DoCM (Curated mutations)NPIPB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB3 (select a term)
intoGenNPIPB3
Cancer3DNPIPB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPIPB3
MedgenNPIPB3
Genetic Testing Registry NPIPB3
NextProtQ92617 [Medical]
TSGene23117
GENETestsNPIPB3
Target ValidationNPIPB3
Huge Navigator NPIPB3 [HugePedia]
snp3D : Map Gene to Disease23117
BioCentury BCIQNPIPB3
ClinGenNPIPB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23117
Chemical/Pharm GKB GenePA164724182
Clinical trialNPIPB3
Miscellaneous
canSAR (ICR)NPIPB3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB3
EVEXNPIPB3
GoPubMedNPIPB3
iHOPNPIPB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:03:36 CET 2017

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