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NPIPB4 (nuclear pore complex interacting protein family member B4)

Identity

Alias_namesnuclear pore complex interacting protein family, member B4
Other alias61E3.4
HGNC (Hugo) NPIPB4
LocusID (NCBI) 440345
Atlas_Id 70939
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 21834563 and ends at 21857756 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB4   41985
Cards
Entrez_Gene (NCBI)NPIPB4  440345  nuclear pore complex interacting protein family member B4
Aliases61E3.4
GeneCards (Weizmann)NPIPB4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:21834563-21857756 [Contig_View]  NPIPB4 [Vega]
TCGA cBioPortalNPIPB4
AceView (NCBI)NPIPB4
Genatlas (Paris)NPIPB4
WikiGenes440345
SOURCE (Princeton)NPIPB4
Genetics Home Reference (NIH)NPIPB4
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB4  -     chr16:21834563-21857756 -  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB4  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB4 - 16p12.2 [CytoView hg19]  NPIPB4 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB4 [Mapview hg19]  NPIPB4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303607
RefSeq transcript (Entrez)NM_001310148
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB4
Cluster EST : UnigeneHs.611072 [ NCBI ]
CGAP (NCI)Hs.611072
Gene ExpressionNPIPB4 [ NCBI-GEO ]   NPIPB4 [ EBI - ARRAY_EXPRESS ]   NPIPB4 [ SEEK ]   NPIPB4 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440345
GTEX Portal (Tissue expression)NPIPB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JG80   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JG80  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JG80
Splice isoforms : SwissVarC9JG80
PhosPhoSitePlusC9JG80
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB4
DMDM Disease mutations440345
Blocks (Seattle)NPIPB4
SuperfamilyC9JG80
Peptide AtlasC9JG80
Protein Interaction databases
DIP (DOE-UCLA)C9JG80
IntAct (EBI)C9JG80
BioGRIDNPIPB4
STRING (EMBL)NPIPB4
ZODIACNPIPB4
Ontologies - Pathways
QuickGOC9JG80
Ontology : AmiGOnucleoplasm  integral component of membrane  
Ontology : EGO-EBInucleoplasm  integral component of membrane  
NDEx NetworkNPIPB4
Atlas of Cancer Signalling NetworkNPIPB4
Wikipedia pathwaysNPIPB4
Orthology - Evolution
OrthoDB440345
Phylogenetic Trees/Animal Genes : TreeFamNPIPB4
HOVERGENC9JG80
HOGENOMC9JG80
Homologs : HomoloGeneNPIPB4
Homology/Alignments : Family Browser (UCSC)NPIPB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB4
dbVarNPIPB4
ClinVarNPIPB4
1000_GenomesNPIPB4 
Exome Variant ServerNPIPB4
ExAC (Exome Aggregation Consortium)NPIPB4 (select the gene name)
Genetic variants : HAPMAP440345
Genomic Variants (DGV)NPIPB4 [DGVbeta]
DECIPHERNPIPB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB4 
Mutations
ICGC Data PortalNPIPB4 
TCGA Data PortalNPIPB4 
Broad Tumor PortalNPIPB4
OASIS PortalNPIPB4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB4
BioMutasearch NPIPB4
DgiDB (Drug Gene Interaction Database)NPIPB4
DoCM (Curated mutations)NPIPB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB4 (select a term)
intoGenNPIPB4
Cancer3DNPIPB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB4
Genetic Testing Registry NPIPB4
NextProtC9JG80 [Medical]
TSGene440345
GENETestsNPIPB4
Target ValidationNPIPB4
Huge Navigator NPIPB4 [HugePedia]
snp3D : Map Gene to Disease440345
BioCentury BCIQNPIPB4
ClinGenNPIPB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440345
Chemical/Pharm GKB GenePA166123715
Clinical trialNPIPB4
Miscellaneous
canSAR (ICR)NPIPB4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB4
EVEXNPIPB4
GoPubMedNPIPB4
iHOPNPIPB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:15 CEST 2017

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