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NPIPB5 (nuclear pore complex interacting protein family member B5)

Identity

Alias_namesnuclear pore complex interacting protein family, member B5
Other alias-
HGNC (Hugo) NPIPB5
LocusID (NCBI) 100132247
Atlas_Id 70940
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22513523 and ends at 22536520 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB5   37233
Cards
Entrez_Gene (NCBI)NPIPB5  100132247  nuclear pore complex interacting protein family member B5
Aliases
GeneCards (Weizmann)NPIPB5
Ensembl hg19 (Hinxton)ENSG00000243716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243716 [Gene_View]  chr16:22513523-22536520 [Contig_View]  NPIPB5 [Vega]
ICGC DataPortalENSG00000243716
TCGA cBioPortalNPIPB5
AceView (NCBI)NPIPB5
Genatlas (Paris)NPIPB5
WikiGenes100132247
SOURCE (Princeton)NPIPB5
Genetics Home Reference (NIH)NPIPB5
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB5  -     chr16:22513523-22536520 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB5  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB5 - 16p12.2 [CytoView hg19]  NPIPB5 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB5 [Mapview hg19]  NPIPB5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293635 AK296301 AK296338 AK303264 AK303572
RefSeq transcript (Entrez)NM_001135865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB5
Cluster EST : UnigeneHs.720286 [ NCBI ]
CGAP (NCI)Hs.720286
Alternative Splicing GalleryENSG00000243716
Gene ExpressionNPIPB5 [ NCBI-GEO ]   NPIPB5 [ EBI - ARRAY_EXPRESS ]   NPIPB5 [ SEEK ]   NPIPB5 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132247
GTEX Portal (Tissue expression)NPIPB5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MRT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MRT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MRT5
Splice isoforms : SwissVarA8MRT5
PhosPhoSitePlusA8MRT5
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB5
DMDM Disease mutations100132247
Blocks (Seattle)NPIPB5
SuperfamilyA8MRT5
Human Protein AtlasENSG00000243716
Peptide AtlasA8MRT5
IPIIPI00456759   
Protein Interaction databases
DIP (DOE-UCLA)A8MRT5
IntAct (EBI)A8MRT5
FunCoupENSG00000243716
BioGRIDNPIPB5
STRING (EMBL)NPIPB5
ZODIACNPIPB5
Ontologies - Pathways
QuickGOA8MRT5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNPIPB5
Atlas of Cancer Signalling NetworkNPIPB5
Wikipedia pathwaysNPIPB5
Orthology - Evolution
OrthoDB100132247
GeneTree (enSembl)ENSG00000243716
Phylogenetic Trees/Animal Genes : TreeFamNPIPB5
HOVERGENA8MRT5
HOGENOMA8MRT5
Homologs : HomoloGeneNPIPB5
Homology/Alignments : Family Browser (UCSC)NPIPB5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB5
dbVarNPIPB5
ClinVarNPIPB5
1000_GenomesNPIPB5 
Exome Variant ServerNPIPB5
ExAC (Exome Aggregation Consortium)NPIPB5 (select the gene name)
Genetic variants : HAPMAP100132247
Genomic Variants (DGV)NPIPB5 [DGVbeta]
DECIPHERNPIPB5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB5 
Mutations
ICGC Data PortalNPIPB5 
TCGA Data PortalNPIPB5 
Broad Tumor PortalNPIPB5
OASIS PortalNPIPB5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB5
BioMutasearch NPIPB5
DgiDB (Drug Gene Interaction Database)NPIPB5
DoCM (Curated mutations)NPIPB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB5 (select a term)
intoGenNPIPB5
Cancer3DNPIPB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB5
Genetic Testing Registry NPIPB5
NextProtA8MRT5 [Medical]
TSGene100132247
GENETestsNPIPB5
Target ValidationNPIPB5
Huge Navigator NPIPB5 [HugePedia]
snp3D : Map Gene to Disease100132247
BioCentury BCIQNPIPB5
ClinGenNPIPB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132247
Chemical/Pharm GKB GenePA166123716
Clinical trialNPIPB5
Miscellaneous
canSAR (ICR)NPIPB5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB5
EVEXNPIPB5
GoPubMedNPIPB5
iHOPNPIPB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:00 CEST 2017

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