Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NPIPB6 (nuclear pore complex interacting protein family, member B6)

Identity

Alias_namesnuclear pore complex interacting protein family, member B6
Other aliasNPIPB
HGNC (Hugo) NPIPB6
LocusID (NCBI) 728741
Atlas_Id 70941
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28353839 and ends at 28374181 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB6   37454
Cards
Entrez_Gene (NCBI)NPIPB6  728741  nuclear pore complex interacting protein family, member B6
AliasesNPIPB
GeneCards (Weizmann)NPIPB6
Ensembl hg19 (Hinxton)ENSG00000198156 [Gene_View]  chr16:28353839-28374181 [Contig_View]  NPIPB6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198156 [Gene_View]  chr16:28353839-28374181 [Contig_View]  NPIPB6 [Vega]
ICGC DataPortalENSG00000198156
TCGA cBioPortalNPIPB6
AceView (NCBI)NPIPB6
Genatlas (Paris)NPIPB6
WikiGenes728741
SOURCE (Princeton)NPIPB6
Genetics Home Reference (NIH)NPIPB6
Genomic and cartography
GoldenPath hg19 (UCSC)NPIPB6  -     chr16:28353839-28374181 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPIPB6  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblNPIPB6 - 16p11.2 [CytoView hg19]  NPIPB6 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB6 [Mapview hg19]  NPIPB6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI149699 BC144439 BC157836 BQ447892 KF175222
RefSeq transcript (Entrez)NM_001282524
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)NPIPB6
Cluster EST : UnigeneHs.726467 [ NCBI ]
CGAP (NCI)Hs.726467
Alternative Splicing GalleryENSG00000198156
Gene ExpressionNPIPB6 [ NCBI-GEO ]   NPIPB6 [ EBI - ARRAY_EXPRESS ]   NPIPB6 [ SEEK ]   NPIPB6 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728741
GTEX Portal (Tissue expression)NPIPB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PJ23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PJ23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PJ23
Splice isoforms : SwissVarE9PJ23
PhosPhoSitePlusE9PJ23
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB6
DMDM Disease mutations728741
Blocks (Seattle)NPIPB6
SuperfamilyE9PJ23
Human Protein AtlasENSG00000198156
Peptide AtlasE9PJ23
Protein Interaction databases
DIP (DOE-UCLA)E9PJ23
IntAct (EBI)E9PJ23
FunCoupENSG00000198156
BioGRIDNPIPB6
STRING (EMBL)NPIPB6
ZODIACNPIPB6
Ontologies - Pathways
QuickGOE9PJ23
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkNPIPB6
Atlas of Cancer Signalling NetworkNPIPB6
Wikipedia pathwaysNPIPB6
Orthology - Evolution
OrthoDB728741
GeneTree (enSembl)ENSG00000198156
Phylogenetic Trees/Animal Genes : TreeFamNPIPB6
HOVERGENE9PJ23
HOGENOME9PJ23
Homologs : HomoloGeneNPIPB6
Homology/Alignments : Family Browser (UCSC)NPIPB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB6
dbVarNPIPB6
ClinVarNPIPB6
1000_GenomesNPIPB6 
Exome Variant ServerNPIPB6
ExAC (Exome Aggregation Consortium)NPIPB6 (select the gene name)
Genetic variants : HAPMAP728741
Genomic Variants (DGV)NPIPB6 [DGVbeta]
DECIPHER (Syndromes)16:28353839-28374181  ENSG00000198156
CONAN: Copy Number AnalysisNPIPB6 
Mutations
ICGC Data PortalNPIPB6 
TCGA Data PortalNPIPB6 
Broad Tumor PortalNPIPB6
OASIS PortalNPIPB6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB6
BioMutasearch NPIPB6
DgiDB (Drug Gene Interaction Database)NPIPB6
DoCM (Curated mutations)NPIPB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB6 (select a term)
intoGenNPIPB6
Cancer3DNPIPB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB6
Genetic Testing Registry NPIPB6
NextProtE9PJ23 [Medical]
TSGene728741
GENETestsNPIPB6
Huge Navigator NPIPB6 [HugePedia]
snp3D : Map Gene to Disease728741
BioCentury BCIQNPIPB6
ClinGenNPIPB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728741
Clinical trialNPIPB6
Miscellaneous
canSAR (ICR)NPIPB6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB6
EVEXNPIPB6
GoPubMedNPIPB6
iHOPNPIPB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:17 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.