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NPIPB7 (nuclear pore complex interacting protein family member B7)

Identity

Alias_namesNPIPL1
nuclear pore complex interacting protein-like 1
nuclear pore complex interacting protein family, member B7
Alias_symbol (synonym)LOC440350
Other aliasA-575C2.4
A-761H5.5
HGNC (Hugo) NPIPB7
LocusID (NCBI) 440350
Atlas_Id 70942
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74377973 and ends at 74390237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AHCY (20q11.22) / NPIPB7 (16q23.1)CD74 (5q32) / NPIPB7 (16q23.1)CLEC3B (3p21.31) / NPIPB7 (16q23.1)
COL6A1 (21q22.3) / NPIPB7 (16q23.1)GNAS-AS1 (20q13.32) / NPIPB7 (16q23.1)GUSBP11 (22q11.23) / NPIPB7 (16q23.1)
HFM1 (1p22.2) / NPIPB7 (16q23.1)INS-IGF2 (11p15.5) / NPIPB7 (16q23.1)LOC100507412 (-) / NPIPB7 (16q23.1)
MRPS18B (6p21.33) / NPIPB7 (16q23.1)NASP (1p34.1) / NPIPB7 (16q23.1)NPIPB7 (16q23.1) / ANKZF1 (2q35)
NPIPB7 (16q23.1) / ATP10B (5q34)NPIPB7 (16q23.1) / BCYRN1 (Xq13.1)NPIPB7 (16q23.1) / GABARAPL1 (12p13.2)
NPIPB7 (16q23.1) / GNAI2 (3p21.31)NPIPB7 (16q23.1) / NPIPB3 (16p12.2)NPIPB7 (16q23.1) / NPIPB7 (16q23.1)
NPIPB7 (16q23.1) / NRBP2 (8q24.3)NPIPB7 (16q23.1) / RPS9 (19q13.42)NPIPB7 (16q23.1) / SMG6 (17p13.3)
NPIPB7 (16q23.1) / TBC1D24 (16p13.3)NPIPB7 (16q23.1) / TMEM9B (11p15.4)NPIPB7 (16q23.1) / TMOD2 (15q21.2)
NPIPB7 (16q23.1) / TSG101 (11p15.1)NPIPB7 (16q23.1) / USP20 (9q34.11)PIGR (1q32.1) / NPIPB7 (16q23.1)
PRELID1 (5q35.3) / NPIPB7 (16q23.1)SMARCD3 (7q36.1) / NPIPB7 (16q23.1)TMEM9B (11p15.4) / NPIPB7 (16q23.1)
UFC1 (1q23.3) / NPIPB7 (16q23.1)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)NPIPB7   33832
Cards
Entrez_Gene (NCBI)NPIPB7  440350  nuclear pore complex interacting protein family member B7
AliasesA-575C2.4; A-761H5.5; NPIPL1
GeneCards (Weizmann)NPIPB7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:74377973-74390237 [Contig_View]  NPIPB7 [Vega]
TCGA cBioPortalNPIPB7
AceView (NCBI)NPIPB7
Genatlas (Paris)NPIPB7
WikiGenes440350
SOURCE (Princeton)NPIPB7
Genetics Home Reference (NIH)NPIPB7
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB7  -     chr16:74377973-74390237 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB7  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblNPIPB7 - 16q23.1 [CytoView hg19]  NPIPB7 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBINPIPB7 [Mapview hg19]  NPIPB7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156858
RefSeq transcript (Entrez)NM_001018122
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB7
Gene ExpressionNPIPB7 [ NCBI-GEO ]   NPIPB7 [ EBI - ARRAY_EXPRESS ]   NPIPB7 [ SEEK ]   NPIPB7 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440350
GTEX Portal (Tissue expression)NPIPB7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75200   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75200  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75200
Splice isoforms : SwissVarO75200
PhosPhoSitePlusO75200
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB7
DMDM Disease mutations440350
Blocks (Seattle)NPIPB7
SuperfamilyO75200
Peptide AtlasO75200
HPRD18637
IPIIPI01022222   
Protein Interaction databases
DIP (DOE-UCLA)O75200
IntAct (EBI)O75200
BioGRIDNPIPB7
STRING (EMBL)NPIPB7
ZODIACNPIPB7
Ontologies - Pathways
QuickGOO75200
Ontology : AmiGOextracellular region  nucleoplasm  
Ontology : EGO-EBIextracellular region  nucleoplasm  
NDEx NetworkNPIPB7
Atlas of Cancer Signalling NetworkNPIPB7
Wikipedia pathwaysNPIPB7
Orthology - Evolution
OrthoDB440350
Phylogenetic Trees/Animal Genes : TreeFamNPIPB7
HOVERGENO75200
HOGENOMO75200
Homologs : HomoloGeneNPIPB7
Homology/Alignments : Family Browser (UCSC)NPIPB7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB7
dbVarNPIPB7
ClinVarNPIPB7
1000_GenomesNPIPB7 
Exome Variant ServerNPIPB7
ExAC (Exome Aggregation Consortium)NPIPB7 (select the gene name)
Genetic variants : HAPMAP440350
Genomic Variants (DGV)NPIPB7 [DGVbeta]
DECIPHERNPIPB7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB7 
Mutations
ICGC Data PortalNPIPB7 
TCGA Data PortalNPIPB7 
Broad Tumor PortalNPIPB7
OASIS PortalNPIPB7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB7
BioMutasearch NPIPB7
DgiDB (Drug Gene Interaction Database)NPIPB7
DoCM (Curated mutations)NPIPB7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB7 (select a term)
intoGenNPIPB7
Cancer3DNPIPB7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB7
Genetic Testing Registry NPIPB7
NextProtO75200 [Medical]
TSGene440350
GENETestsNPIPB7
Target ValidationNPIPB7
Huge Navigator NPIPB7 [HugePedia]
snp3D : Map Gene to Disease440350
BioCentury BCIQNPIPB7
ClinGenNPIPB7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440350
Chemical/Pharm GKB GenePA164724152
Clinical trialNPIPB7
Miscellaneous
canSAR (ICR)NPIPB7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB7
EVEXNPIPB7
GoPubMedNPIPB7
iHOPNPIPB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:00 CEST 2017

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