Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NPIPB7 (nuclear pore complex interacting protein family member B7)

Identity

Alias (NCBI)A-575C2.4
A-761H5.5
NPIPL1
HGNC (Hugo) NPIPB7
HGNC Alias symbLOC440350
HGNC Previous nameNPIPL1
HGNC Previous namenuclear pore complex interacting protein-like 1
 nuclear pore complex interacting protein family, member B7
LocusID (NCBI) 440350
Atlas_Id 70942
Location 16p12.1  [Link to chromosome band 16p12]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCY (20q11.22) / NPIPB7 (16q23.1)CD74 (5q32) / NPIPB7 (16q23.1)CLEC3B (3p21.31) / NPIPB7 (16q23.1)
COL6A1 (21q22.3) / NPIPB7 (16q23.1)GNAS-AS1 (20q13.32) / NPIPB7 (16q23.1)GUSBP11 (22q11.23) / NPIPB7 (16q23.1)
HFM1 (1p22.2) / NPIPB7 (16q23.1)INS-IGF2 (11p15.5) / NPIPB7 (16q23.1)LOC100507412 (-) / NPIPB7 (16q23.1)
MRPS18B (6p21.33) / NPIPB7 (16q23.1)NASP (1p34.1) / NPIPB7 (16q23.1)NPIPB7 (16q23.1) / ANKZF1 (2q35)
NPIPB7 (16q23.1) / ATP10B (5q34)NPIPB7 (16q23.1) / BCYRN1 (Xq13.1)NPIPB7 (16q23.1) / GABARAPL1 (12p13.2)
NPIPB7 (16q23.1) / GNAI2 (3p21.31)NPIPB7 (16q23.1) / NPIPB3 (16p12.2)NPIPB7 (16q23.1) / NPIPB7 (16q23.1)
NPIPB7 (16q23.1) / NRBP2 (8q24.3)NPIPB7 (16q23.1) / RPS9 (19q13.42)NPIPB7 (16q23.1) / SMG6 (17p13.3)
NPIPB7 (16q23.1) / TBC1D24 (16p13.3)NPIPB7 (16q23.1) / TMEM9B (11p15.4)NPIPB7 (16q23.1) / TMOD2 (15q21.2)
NPIPB7 (16q23.1) / TSG101 (11p15.1)NPIPB7 (16q23.1) / USP20 (9q34.11)PIGR (1q32.1) / NPIPB7 (16q23.1)
PRELID1 (5q35.3) / NPIPB7 (16q23.1)SMARCD3 (7q36.1) / NPIPB7 (16q23.1)TMEM9B (11p15.4) / NPIPB7 (16q23.1)
UFC1 (1q23.3) / NPIPB7 (16q23.1)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)NPIPB7   33832
Cards
Entrez_Gene (NCBI)NPIPB7    nuclear pore complex interacting protein family member B7
AliasesA-575C2.4; A-761H5.5; NPIPL1
GeneCards (Weizmann)NPIPB7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  NPIPB7 [Vega]
TCGA cBioPortalNPIPB7
AceView (NCBI)NPIPB7
Genatlas (Paris)NPIPB7
SOURCE (Princeton)NPIPB7
Genetics Home Reference (NIH)NPIPB7
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB7  -  
GoldenPath hg19 (UCSC)NPIPB7  -  
GoldenPathNPIPB7 - [CytoView hg19]  NPIPB7 - [CytoView hg38]
Genome Data Viewer NCBINPIPB7 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001018122
Consensus coding sequences : CCDS (NCBI)NPIPB7
Gene ExpressionNPIPB7 [ NCBI-GEO ]   NPIPB7 [ EBI - ARRAY_EXPRESS ]   NPIPB7 [ SEEK ]   NPIPB7 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB7 [ Firebrowse - Broad ]
GenevisibleExpression of NPIPB7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440350
GTEX Portal (Tissue expression)NPIPB7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75200   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75200  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75200
PhosPhoSitePlusO75200
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB7
SuperfamilyO75200
AlphaFold pdb e-kbO75200   
HPRD18637
Protein Interaction databases
DIP (DOE-UCLA)O75200
IntAct (EBI)O75200
BioGRIDNPIPB7
STRING (EMBL)NPIPB7
ZODIACNPIPB7
Ontologies - Pathways
QuickGOO75200
Ontology : AmiGOextracellular region  nucleoplasm  nucleoplasm  
Ontology : EGO-EBIextracellular region  nucleoplasm  nucleoplasm  
NDEx NetworkNPIPB7
Atlas of Cancer Signalling NetworkNPIPB7
Wikipedia pathwaysNPIPB7
Orthology - Evolution
OrthoDB440350
Phylogenetic Trees/Animal Genes : TreeFamNPIPB7
Homologs : HomoloGeneNPIPB7
Homology/Alignments : Family Browser (UCSC)NPIPB7
Gene fusions - Rearrangements
Fusion : QuiverNPIPB7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB7
dbVarNPIPB7
ClinVarNPIPB7
MonarchNPIPB7
1000_GenomesNPIPB7 
Exome Variant ServerNPIPB7
Varsome BrowserNPIPB7
ACMGNPIPB7 variants
VarityO75200
Genomic Variants (DGV)NPIPB7 [DGVbeta]
DECIPHERNPIPB7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB7 
Mutations
ICGC Data PortalNPIPB7 
TCGA Data PortalNPIPB7 
Broad Tumor PortalNPIPB7
OASIS PortalNPIPB7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPIPB7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNPIPB7
Mutations and Diseases : HGMDNPIPB7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNPIPB7
DgiDB (Drug Gene Interaction Database)NPIPB7
DoCM (Curated mutations)NPIPB7
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB7
Cancer3DNPIPB7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPIPB7
MedgenNPIPB7
Genetic Testing Registry NPIPB7
NextProtO75200 [Medical]
GENETestsNPIPB7
Target ValidationNPIPB7
Huge Navigator NPIPB7 [HugePedia]
ClinGenNPIPB7
Clinical trials, drugs, therapy
MyCancerGenomeNPIPB7
Protein Interactions : CTDNPIPB7
Pharm GKB GenePA164724152
PharosO75200
Clinical trialNPIPB7
Miscellaneous
canSAR (ICR)NPIPB7
HarmonizomeNPIPB7
DataMed IndexNPIPB7
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNPIPB7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:13:03 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.