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NPIPB8 (nuclear pore complex interacting protein family member B8)

Identity

Alias (NCBI)-
HGNC (Hugo) NPIPB8
HGNC Previous namenuclear pore complex interacting protein family, member B8
LocusID (NCBI) 728734
Atlas_Id 77741
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28638361 and ends at 28658630 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NPIPB8   37490
Cards
Entrez_Gene (NCBI)NPIPB8    nuclear pore complex interacting protein family member B8
Aliases
GeneCards (Weizmann)NPIPB8
Ensembl hg19 (Hinxton)ENSG00000255524 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255524 [Gene_View]  ENSG00000255524 [Sequence]  chr16:28638361-28658630 [Contig_View]  NPIPB8 [Vega]
ICGC DataPortalENSG00000255524
TCGA cBioPortalNPIPB8
AceView (NCBI)NPIPB8
Genatlas (Paris)NPIPB8
SOURCE (Princeton)NPIPB8
Genetics Home Reference (NIH)NPIPB8
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB8  -     chr16:28638361-28658630 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB8  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathNPIPB8 - 16p11.2 [CytoView hg19]  NPIPB8 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000255524
Genome Data Viewer NCBINPIPB8 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310136 NM_001385922
Consensus coding sequences : CCDS (NCBI)NPIPB8
Gene ExpressionNPIPB8 [ NCBI-GEO ]   NPIPB8 [ EBI - ARRAY_EXPRESS ]   NPIPB8 [ SEEK ]   NPIPB8 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB8 [ Firebrowse - Broad ]
GenevisibleExpression of NPIPB8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728734
GTEX Portal (Tissue expression)NPIPB8
Human Protein AtlasENSG00000255524-NPIPB8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PQR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PQR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PQR5
PhosPhoSitePlusE9PQR5
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB8
SuperfamilyE9PQR5
AlphaFold pdb e-kbE9PQR5   
Human Protein Atlas [tissue]ENSG00000255524-NPIPB8 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)E9PQR5
IntAct (EBI)E9PQR5
BioGRIDNPIPB8
STRING (EMBL)NPIPB8
ZODIACNPIPB8
Ontologies - Pathways
QuickGOE9PQR5
Ontology : AmiGOnucleoplasm  nucleoplasm  
Ontology : EGO-EBInucleoplasm  nucleoplasm  
NDEx NetworkNPIPB8
Atlas of Cancer Signalling NetworkNPIPB8
Wikipedia pathwaysNPIPB8
Orthology - Evolution
OrthoDB728734
GeneTree (enSembl)ENSG00000255524
Phylogenetic Trees/Animal Genes : TreeFamNPIPB8
Homologs : HomoloGeneNPIPB8
Homology/Alignments : Family Browser (UCSC)NPIPB8
Gene fusions - Rearrangements
Fusion : QuiverNPIPB8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB8
dbVarNPIPB8
ClinVarNPIPB8
MonarchNPIPB8
1000_GenomesNPIPB8 
Exome Variant ServerNPIPB8
GNOMAD BrowserENSG00000255524
Varsome BrowserNPIPB8
ACMGNPIPB8 variants
VarityE9PQR5
Genomic Variants (DGV)NPIPB8 [DGVbeta]
DECIPHERNPIPB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB8 
Mutations
ICGC Data PortalNPIPB8 
TCGA Data PortalNPIPB8 
Broad Tumor PortalNPIPB8
OASIS PortalNPIPB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPIPB8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNPIPB8
Mutations and Diseases : HGMDNPIPB8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNPIPB8
DgiDB (Drug Gene Interaction Database)NPIPB8
DoCM (Curated mutations)NPIPB8
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB8
Cancer3DNPIPB8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPIPB8
MedgenNPIPB8
Genetic Testing Registry NPIPB8
NextProtE9PQR5 [Medical]
GENETestsNPIPB8
Target ValidationNPIPB8
Huge Navigator NPIPB8 [HugePedia]
ClinGenNPIPB8
Clinical trials, drugs, therapy
MyCancerGenomeNPIPB8
Protein Interactions : CTDNPIPB8
Pharm GKB GenePA166123718
PharosE9PQR5
Clinical trialNPIPB8
Miscellaneous
canSAR (ICR)NPIPB8
HarmonizomeNPIPB8
DataMed IndexNPIPB8
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNPIPB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:03 CEST 2021

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