Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NPIPB8 (nuclear pore complex interacting protein family member B8)

Identity

Alias_namesnuclear pore complex interacting protein family, member B8
Other alias-
HGNC (Hugo) NPIPB8
LocusID (NCBI) 728734
Atlas_Id 77741
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28638361 and ends at 28658630 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB8   37490
Cards
Entrez_Gene (NCBI)NPIPB8  728734  nuclear pore complex interacting protein family member B8
Aliases
GeneCards (Weizmann)NPIPB8
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:28638361-28658630 [Contig_View]  NPIPB8 [Vega]
TCGA cBioPortalNPIPB8
AceView (NCBI)NPIPB8
Genatlas (Paris)NPIPB8
WikiGenes728734
SOURCE (Princeton)NPIPB8
Genetics Home Reference (NIH)NPIPB8
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB8  -     chr16:28638361-28658630 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB8  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB8 - 16p11.2 [CytoView hg19]  NPIPB8 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB8 [Mapview hg19]  NPIPB8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310136
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB8
Gene ExpressionNPIPB8 [ NCBI-GEO ]   NPIPB8 [ EBI - ARRAY_EXPRESS ]   NPIPB8 [ SEEK ]   NPIPB8 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728734
GTEX Portal (Tissue expression)NPIPB8
Protein : pattern, domain, 3D structure
UniProt/SwissProtE9PQR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtE9PQR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProE9PQR5
Splice isoforms : SwissVarE9PQR5
PhosPhoSitePlusE9PQR5
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB8
DMDM Disease mutations728734
Blocks (Seattle)NPIPB8
SuperfamilyE9PQR5
Peptide AtlasE9PQR5
Protein Interaction databases
DIP (DOE-UCLA)E9PQR5
IntAct (EBI)E9PQR5
BioGRIDNPIPB8
STRING (EMBL)NPIPB8
ZODIACNPIPB8
Ontologies - Pathways
QuickGOE9PQR5
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPB8
Atlas of Cancer Signalling NetworkNPIPB8
Wikipedia pathwaysNPIPB8
Orthology - Evolution
OrthoDB728734
Phylogenetic Trees/Animal Genes : TreeFamNPIPB8
HOVERGENE9PQR5
HOGENOME9PQR5
Homologs : HomoloGeneNPIPB8
Homology/Alignments : Family Browser (UCSC)NPIPB8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB8
dbVarNPIPB8
ClinVarNPIPB8
1000_GenomesNPIPB8 
Exome Variant ServerNPIPB8
ExAC (Exome Aggregation Consortium)NPIPB8 (select the gene name)
Genetic variants : HAPMAP728734
Genomic Variants (DGV)NPIPB8 [DGVbeta]
DECIPHERNPIPB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB8 
Mutations
ICGC Data PortalNPIPB8 
TCGA Data PortalNPIPB8 
Broad Tumor PortalNPIPB8
OASIS PortalNPIPB8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB8
BioMutasearch NPIPB8
DgiDB (Drug Gene Interaction Database)NPIPB8
DoCM (Curated mutations)NPIPB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB8 (select a term)
intoGenNPIPB8
Cancer3DNPIPB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB8
Genetic Testing Registry NPIPB8
NextProtE9PQR5 [Medical]
TSGene728734
GENETestsNPIPB8
Target ValidationNPIPB8
Huge Navigator NPIPB8 [HugePedia]
snp3D : Map Gene to Disease728734
BioCentury BCIQNPIPB8
ClinGenNPIPB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728734
Chemical/Pharm GKB GenePA166123718
Clinical trialNPIPB8
Miscellaneous
canSAR (ICR)NPIPB8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB8
EVEXNPIPB8
GoPubMedNPIPB8
iHOPNPIPB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:33:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.