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NPIPB9 (nuclear pore complex interacting protein family member B9)

Identity

Alias (NCBI)-
HGNC (Hugo) NPIPB9
HGNC Previous namenuclear pore complex interacting protein family, member B9
LocusID (NCBI) 100507607
Atlas_Id 70943
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28752435 and ends at 28772823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NPIPB9   41987
Cards
Entrez_Gene (NCBI)NPIPB9    nuclear pore complex interacting protein family member B9
Aliases
GeneCards (Weizmann)NPIPB9
Ensembl hg19 (Hinxton)ENSG00000196993 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196993 [Gene_View]  ENSG00000196993 [Sequence]  chr16:28752435-28772823 [Contig_View]  NPIPB9 [Vega]
ICGC DataPortalENSG00000196993
TCGA cBioPortalNPIPB9
AceView (NCBI)NPIPB9
Genatlas (Paris)NPIPB9
SOURCE (Princeton)NPIPB9
Genetics Home Reference (NIH)NPIPB9
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB9  -     chr16:28752435-28772823 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB9  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathNPIPB9 - 16p11.2 [CytoView hg19]  NPIPB9 - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000196993
Genome Data Viewer NCBINPIPB9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC171825
RefSeq transcript (Entrez)NM_001287250 NM_001287251
Consensus coding sequences : CCDS (NCBI)NPIPB9
Gene ExpressionNPIPB9 [ NCBI-GEO ]   NPIPB9 [ EBI - ARRAY_EXPRESS ]   NPIPB9 [ SEEK ]   NPIPB9 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB9 [ Firebrowse - Broad ]
GenevisibleExpression of NPIPB9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507607
GTEX Portal (Tissue expression)NPIPB9
Human Protein AtlasENSG00000196993-NPIPB9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtF8W1W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF8W1W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF8W1W9
PhosPhoSitePlusF8W1W9
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB9
SuperfamilyF8W1W9
AlphaFold pdb e-kbF8W1W9   
Human Protein Atlas [tissue]ENSG00000196993-NPIPB9 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)F8W1W9
IntAct (EBI)F8W1W9
BioGRIDNPIPB9
STRING (EMBL)NPIPB9
ZODIACNPIPB9
Ontologies - Pathways
QuickGOF8W1W9
Ontology : AmiGOnucleoplasm  nucleoplasm  
Ontology : EGO-EBInucleoplasm  nucleoplasm  
NDEx NetworkNPIPB9
Atlas of Cancer Signalling NetworkNPIPB9
Wikipedia pathwaysNPIPB9
Orthology - Evolution
OrthoDB100507607
GeneTree (enSembl)ENSG00000196993
Phylogenetic Trees/Animal Genes : TreeFamNPIPB9
Homologs : HomoloGeneNPIPB9
Homology/Alignments : Family Browser (UCSC)NPIPB9
Gene fusions - Rearrangements
Fusion : QuiverNPIPB9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB9
dbVarNPIPB9
ClinVarNPIPB9
MonarchNPIPB9
1000_GenomesNPIPB9 
Exome Variant ServerNPIPB9
GNOMAD BrowserENSG00000196993
Varsome BrowserNPIPB9
ACMGNPIPB9 variants
VarityF8W1W9
Genomic Variants (DGV)NPIPB9 [DGVbeta]
DECIPHERNPIPB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB9 
Mutations
ICGC Data PortalNPIPB9 
TCGA Data PortalNPIPB9 
Broad Tumor PortalNPIPB9
OASIS PortalNPIPB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPIPB9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNPIPB9
Mutations and Diseases : HGMDNPIPB9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNPIPB9
DgiDB (Drug Gene Interaction Database)NPIPB9
DoCM (Curated mutations)NPIPB9
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB9
Cancer3DNPIPB9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPIPB9
MedgenNPIPB9
Genetic Testing Registry NPIPB9
NextProtF8W1W9 [Medical]
GENETestsNPIPB9
Target ValidationNPIPB9
Huge Navigator NPIPB9 [HugePedia]
ClinGenNPIPB9
Clinical trials, drugs, therapy
MyCancerGenomeNPIPB9
Protein Interactions : CTDNPIPB9
Pharm GKB GenePA166123719
PharosF8W1W9
Clinical trialNPIPB9
Miscellaneous
canSAR (ICR)NPIPB9
HarmonizomeNPIPB9
DataMed IndexNPIPB9
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNPIPB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:04 CEST 2021

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