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NPIPB9 (nuclear pore complex interacting protein family member B9)

Identity

Alias_namesnuclear pore complex interacting protein family, member B9
Other alias-
HGNC (Hugo) NPIPB9
LocusID (NCBI) 100507607
Atlas_Id 70943
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 28752435 and ends at 28772823 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPIPB9   41987
Cards
Entrez_Gene (NCBI)NPIPB9  100507607  nuclear pore complex interacting protein family member B9
Aliases
GeneCards (Weizmann)NPIPB9
Ensembl hg19 (Hinxton)ENSG00000196993 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196993 [Gene_View]  chr16:28752435-28772823 [Contig_View]  NPIPB9 [Vega]
ICGC DataPortalENSG00000196993
TCGA cBioPortalNPIPB9
AceView (NCBI)NPIPB9
Genatlas (Paris)NPIPB9
WikiGenes100507607
SOURCE (Princeton)NPIPB9
Genetics Home Reference (NIH)NPIPB9
Genomic and cartography
GoldenPath hg38 (UCSC)NPIPB9  -     chr16:28752435-28772823 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPIPB9  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblNPIPB9 - 16p11.2 [CytoView hg19]  NPIPB9 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBINPIPB9 [Mapview hg19]  NPIPB9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC171825
RefSeq transcript (Entrez)NM_001287250 NM_001287251
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPIPB9
Cluster EST : UnigeneHs.710214 [ NCBI ]
CGAP (NCI)Hs.710214
Alternative Splicing GalleryENSG00000196993
Gene ExpressionNPIPB9 [ NCBI-GEO ]   NPIPB9 [ EBI - ARRAY_EXPRESS ]   NPIPB9 [ SEEK ]   NPIPB9 [ MEM ]
Gene Expression Viewer (FireBrowse)NPIPB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507607
GTEX Portal (Tissue expression)NPIPB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtF8W1W9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF8W1W9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF8W1W9
Splice isoforms : SwissVarF8W1W9
PhosPhoSitePlusF8W1W9
Domains : Interpro (EBI)NPIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPIPB9
DMDM Disease mutations100507607
Blocks (Seattle)NPIPB9
SuperfamilyF8W1W9
Human Protein AtlasENSG00000196993
Peptide AtlasF8W1W9
IPIIPI00979900   
Protein Interaction databases
DIP (DOE-UCLA)F8W1W9
IntAct (EBI)F8W1W9
FunCoupENSG00000196993
BioGRIDNPIPB9
STRING (EMBL)NPIPB9
ZODIACNPIPB9
Ontologies - Pathways
QuickGOF8W1W9
Ontology : AmiGOnucleoplasm  
Ontology : EGO-EBInucleoplasm  
NDEx NetworkNPIPB9
Atlas of Cancer Signalling NetworkNPIPB9
Wikipedia pathwaysNPIPB9
Orthology - Evolution
OrthoDB100507607
GeneTree (enSembl)ENSG00000196993
Phylogenetic Trees/Animal Genes : TreeFamNPIPB9
HOVERGENF8W1W9
HOGENOMF8W1W9
Homologs : HomoloGeneNPIPB9
Homology/Alignments : Family Browser (UCSC)NPIPB9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPIPB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPIPB9
dbVarNPIPB9
ClinVarNPIPB9
1000_GenomesNPIPB9 
Exome Variant ServerNPIPB9
ExAC (Exome Aggregation Consortium)NPIPB9 (select the gene name)
Genetic variants : HAPMAP100507607
Genomic Variants (DGV)NPIPB9 [DGVbeta]
DECIPHERNPIPB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPIPB9 
Mutations
ICGC Data PortalNPIPB9 
TCGA Data PortalNPIPB9 
Broad Tumor PortalNPIPB9
OASIS PortalNPIPB9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPIPB9
BioMutasearch NPIPB9
DgiDB (Drug Gene Interaction Database)NPIPB9
DoCM (Curated mutations)NPIPB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPIPB9 (select a term)
intoGenNPIPB9
Cancer3DNPIPB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPIPB9
Genetic Testing Registry NPIPB9
NextProtF8W1W9 [Medical]
TSGene100507607
GENETestsNPIPB9
Target ValidationNPIPB9
Huge Navigator NPIPB9 [HugePedia]
snp3D : Map Gene to Disease100507607
BioCentury BCIQNPIPB9
ClinGenNPIPB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507607
Chemical/Pharm GKB GenePA166123719
Clinical trialNPIPB9
Miscellaneous
canSAR (ICR)NPIPB9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPIPB9
EVEXNPIPB9
GoPubMedNPIPB9
iHOPNPIPB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:01 CEST 2017

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