Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NPSR1 (neuropeptide S receptor 1)

Identity

Alias_namesGPR154
G protein-coupled receptor 154
Alias_symbol (synonym)PGR14
GPRA
Other aliasASRT2
NPSR
VRR1
HGNC (Hugo) NPSR1
LocusID (NCBI) 387129
Atlas_Id 54945
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 34697851 and ends at 34917944 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
VPS41 (7p14.1) / NPSR1 (7p14.3)VPS41 7p14.1 / NPSR1 7p14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPSR1   23631
Cards
Entrez_Gene (NCBI)NPSR1  387129  neuropeptide S receptor 1
AliasesASRT2; GPR154; GPRA; NPSR; 
PGR14; VRR1
GeneCards (Weizmann)NPSR1
Ensembl hg19 (Hinxton)ENSG00000187258 [Gene_View]  chr7:34697851-34917944 [Contig_View]  NPSR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187258 [Gene_View]  chr7:34697851-34917944 [Contig_View]  NPSR1 [Vega]
ICGC DataPortalENSG00000187258
TCGA cBioPortalNPSR1
AceView (NCBI)NPSR1
Genatlas (Paris)NPSR1
WikiGenes387129
SOURCE (Princeton)NPSR1
Genetics Home Reference (NIH)NPSR1
Genomic and cartography
GoldenPath hg19 (UCSC)NPSR1  -     chr7:34697851-34917944 +  7p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPSR1  -     7p14.3   [Description]    (hg38-Dec_2013)
EnsemblNPSR1 - 7p14.3 [CytoView hg19]  NPSR1 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBINPSR1 [Mapview hg19]  NPSR1 [Mapview hg38]
OMIM608584   608595   
Gene and transcription
Genbank (Entrez)AK124929 AK172847 AY255536 AY310326 AY310327
RefSeq transcript (Entrez)NM_001300933 NM_001300934 NM_001300935 NM_207172 NM_207173
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_012185 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)NPSR1
Cluster EST : UnigeneHs.652373 [ NCBI ]
CGAP (NCI)Hs.652373
Alternative Splicing GalleryENSG00000187258
Gene ExpressionNPSR1 [ NCBI-GEO ]   NPSR1 [ EBI - ARRAY_EXPRESS ]   NPSR1 [ SEEK ]   NPSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPSR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387129
GTEX Portal (Tissue expression)NPSR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6W5P4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6W5P4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6W5P4
Splice isoforms : SwissVarQ6W5P4
PhosPhoSitePlusQ6W5P4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    NPS_rcpt    Vasoprsn_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)NPSR1
DMDM Disease mutations387129
Blocks (Seattle)NPSR1
SuperfamilyQ6W5P4
Human Protein AtlasENSG00000187258
Peptide AtlasQ6W5P4
HPRD10547
IPIIPI00418373   IPI00428568   IPI00556142   IPI00410389   IPI00441882   IPI00428571   IPI00654752   IPI00654855   IPI00654899   IPI00922904   IPI00513899   IPI01012813   
Protein Interaction databases
DIP (DOE-UCLA)Q6W5P4
IntAct (EBI)Q6W5P4
FunCoupENSG00000187258
BioGRIDNPSR1
STRING (EMBL)NPSR1
ZODIACNPSR1
Ontologies - Pathways
QuickGOQ6W5P4
Ontology : AmiGOvasopressin receptor activity  cytoplasm  cytoplasm  plasma membrane  integral component of plasma membrane  neuropeptide signaling pathway  neuropeptide signaling pathway  neuropeptide receptor activity  positive regulation of release of sequestered calcium ion into cytosol  
Ontology : EGO-EBIvasopressin receptor activity  cytoplasm  cytoplasm  plasma membrane  integral component of plasma membrane  neuropeptide signaling pathway  neuropeptide signaling pathway  neuropeptide receptor activity  positive regulation of release of sequestered calcium ion into cytosol  
NDEx NetworkNPSR1
Atlas of Cancer Signalling NetworkNPSR1
Wikipedia pathwaysNPSR1
Orthology - Evolution
OrthoDB387129
GeneTree (enSembl)ENSG00000187258
Phylogenetic Trees/Animal Genes : TreeFamNPSR1
HOVERGENQ6W5P4
HOGENOMQ6W5P4
Homologs : HomoloGeneNPSR1
Homology/Alignments : Family Browser (UCSC)NPSR1
Gene fusions - Rearrangements
Fusion : MitelmanVPS41/NPSR1 [7p14.1/7p14.3]  [t(7;7)(p14;p14)]  
Fusion: TCGAVPS41 7p14.1 NPSR1 7p14.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPSR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPSR1
dbVarNPSR1
ClinVarNPSR1
1000_GenomesNPSR1 
Exome Variant ServerNPSR1
ExAC (Exome Aggregation Consortium)NPSR1 (select the gene name)
Genetic variants : HAPMAP387129
Genomic Variants (DGV)NPSR1 [DGVbeta]
DECIPHER (Syndromes)7:34697851-34917944  ENSG00000187258
CONAN: Copy Number AnalysisNPSR1 
Mutations
ICGC Data PortalNPSR1 
TCGA Data PortalNPSR1 
Broad Tumor PortalNPSR1
OASIS PortalNPSR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPSR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPSR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPSR1
DgiDB (Drug Gene Interaction Database)NPSR1
DoCM (Curated mutations)NPSR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPSR1 (select a term)
intoGenNPSR1
Cancer3DNPSR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608584    608595   
Orphanet
MedgenNPSR1
Genetic Testing Registry NPSR1
NextProtQ6W5P4 [Medical]
TSGene387129
GENETestsNPSR1
Huge Navigator NPSR1 [HugePedia]
snp3D : Map Gene to Disease387129
BioCentury BCIQNPSR1
ClinGenNPSR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387129
Chemical/Pharm GKB GenePA134951416
Clinical trialNPSR1
Miscellaneous
canSAR (ICR)NPSR1 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPSR1
EVEXNPSR1
GoPubMedNPSR1
iHOPNPSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:36 CEST 2017

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