Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NPTX1 (neuronal pentraxin 1)

Identity

Alias_namesneuronal pentraxin I
Other aliasNP1
HGNC (Hugo) NPTX1
LocusID (NCBI) 4884
Atlas_Id 55213
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78440633 and ends at 78450404 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NPTX1 (17q25.3) / NPTX1 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPTX1   7952
Cards
Entrez_Gene (NCBI)NPTX1  4884  neuronal pentraxin 1
AliasesNP1
GeneCards (Weizmann)NPTX1
Ensembl hg19 (Hinxton)ENSG00000171246 [Gene_View]  chr17:78440633-78450404 [Contig_View]  NPTX1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171246 [Gene_View]  chr17:78440633-78450404 [Contig_View]  NPTX1 [Vega]
ICGC DataPortalENSG00000171246
TCGA cBioPortalNPTX1
AceView (NCBI)NPTX1
Genatlas (Paris)NPTX1
WikiGenes4884
SOURCE (Princeton)NPTX1
Genetics Home Reference (NIH)NPTX1
Genomic and cartography
GoldenPath hg19 (UCSC)NPTX1  -     chr17:78440633-78450404 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPTX1  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblNPTX1 - 17q25.3 [CytoView hg19]  NPTX1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBINPTX1 [Mapview hg19]  NPTX1 [Mapview hg38]
OMIM602367   
Gene and transcription
Genbank (Entrez)AI124625 AK124701 AK127335 AL119012 BC089441
RefSeq transcript (Entrez)NM_002522
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)NPTX1
Cluster EST : UnigeneHs.715784 [ NCBI ]
CGAP (NCI)Hs.715784
Alternative Splicing GalleryENSG00000171246
Gene ExpressionNPTX1 [ NCBI-GEO ]   NPTX1 [ EBI - ARRAY_EXPRESS ]   NPTX1 [ SEEK ]   NPTX1 [ MEM ]
Gene Expression Viewer (FireBrowse)NPTX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4884
GTEX Portal (Tissue expression)NPTX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15818   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15818  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15818
Splice isoforms : SwissVarQ15818
PhosPhoSitePlusQ15818
Domaine pattern : Prosite (Expaxy)PENTAXIN (PS00289)   
Domains : Interpro (EBI)ConA-like_dom    Pentaxin-related    Pentaxin_CS   
Domain families : Pfam (Sanger)Pentaxin (PF00354)   
Domain families : Pfam (NCBI)pfam00354   
Domain families : Smart (EMBL)PTX (SM00159)  
Conserved Domain (NCBI)NPTX1
DMDM Disease mutations4884
Blocks (Seattle)NPTX1
SuperfamilyQ15818
Human Protein AtlasENSG00000171246
Peptide AtlasQ15818
HPRD03843
IPIIPI00220562   IPI00791196   
Protein Interaction databases
DIP (DOE-UCLA)Q15818
IntAct (EBI)Q15818
FunCoupENSG00000171246
BioGRIDNPTX1
STRING (EMBL)NPTX1
ZODIACNPTX1
Ontologies - Pathways
QuickGOQ15818
Ontology : AmiGOtransport  synaptic transmission  central nervous system development  transport vesicle  metal ion binding  axonogenesis involved in innervation  
Ontology : EGO-EBItransport  synaptic transmission  central nervous system development  transport vesicle  metal ion binding  axonogenesis involved in innervation  
NDEx NetworkNPTX1
Atlas of Cancer Signalling NetworkNPTX1
Wikipedia pathwaysNPTX1
Orthology - Evolution
OrthoDB4884
GeneTree (enSembl)ENSG00000171246
Phylogenetic Trees/Animal Genes : TreeFamNPTX1
HOVERGENQ15818
HOGENOMQ15818
Homologs : HomoloGeneNPTX1
Homology/Alignments : Family Browser (UCSC)NPTX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPTX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPTX1
dbVarNPTX1
ClinVarNPTX1
1000_GenomesNPTX1 
Exome Variant ServerNPTX1
ExAC (Exome Aggregation Consortium)NPTX1 (select the gene name)
Genetic variants : HAPMAP4884
Genomic Variants (DGV)NPTX1 [DGVbeta]
DECIPHER (Syndromes)17:78440633-78450404  ENSG00000171246
CONAN: Copy Number AnalysisNPTX1 
Mutations
ICGC Data PortalNPTX1 
TCGA Data PortalNPTX1 
Broad Tumor PortalNPTX1
OASIS PortalNPTX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPTX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPTX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPTX1
DgiDB (Drug Gene Interaction Database)NPTX1
DoCM (Curated mutations)NPTX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPTX1 (select a term)
intoGenNPTX1
Cancer3DNPTX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602367   
Orphanet
MedgenNPTX1
Genetic Testing Registry NPTX1
NextProtQ15818 [Medical]
TSGene4884
GENETestsNPTX1
Huge Navigator NPTX1 [HugePedia]
snp3D : Map Gene to Disease4884
BioCentury BCIQNPTX1
ClinGenNPTX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4884
Chemical/Pharm GKB GenePA31738
Clinical trialNPTX1
Miscellaneous
canSAR (ICR)NPTX1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPTX1
EVEXNPTX1
GoPubMedNPTX1
iHOPNPTX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:16 CET 2017

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