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NPTXR (neuronal pentraxin receptor)

Identity

Other aliasNPR
HGNC (Hugo) NPTXR
LocusID (NCBI) 23467
Atlas_Id 70954
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39214456 and ends at 39240017 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NPTXR (22q13.1) / TUBA1B (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPTXR   7954
Cards
Entrez_Gene (NCBI)NPTXR  23467  neuronal pentraxin receptor
AliasesNPR
GeneCards (Weizmann)NPTXR
Ensembl hg19 (Hinxton)ENSG00000221890 [Gene_View]  chr22:39214456-39240017 [Contig_View]  NPTXR [Vega]
Ensembl hg38 (Hinxton)ENSG00000221890 [Gene_View]  chr22:39214456-39240017 [Contig_View]  NPTXR [Vega]
ICGC DataPortalENSG00000221890
TCGA cBioPortalNPTXR
AceView (NCBI)NPTXR
Genatlas (Paris)NPTXR
WikiGenes23467
SOURCE (Princeton)NPTXR
Genetics Home Reference (NIH)NPTXR
Genomic and cartography
GoldenPath hg19 (UCSC)NPTXR  -     chr22:39214456-39240017 -  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPTXR  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblNPTXR - 22q13.1 [CytoView hg19]  NPTXR - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBINPTXR [Mapview hg19]  NPTXR [Mapview hg38]
OMIM609474   
Gene and transcription
Genbank (Entrez)AF052163 AL161974 AL162057 BC043606 BC148601
RefSeq transcript (Entrez)NM_014293 NM_058178
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)NPTXR
Cluster EST : UnigeneHs.91622 [ NCBI ]
CGAP (NCI)Hs.91622
Alternative Splicing GalleryENSG00000221890
Gene ExpressionNPTXR [ NCBI-GEO ]   NPTXR [ EBI - ARRAY_EXPRESS ]   NPTXR [ SEEK ]   NPTXR [ MEM ]
Gene Expression Viewer (FireBrowse)NPTXR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23467
GTEX Portal (Tissue expression)NPTXR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95502   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95502  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95502
Splice isoforms : SwissVarO95502
PhosPhoSitePlusO95502
Domains : Interpro (EBI)ConA-like_dom    Pentaxin   
Domain families : Pfam (Sanger)Pentaxin (PF00354)   
Domain families : Pfam (NCBI)pfam00354   
Domain families : Smart (EMBL)PTX (SM00159)  
Conserved Domain (NCBI)NPTXR
DMDM Disease mutations23467
Blocks (Seattle)NPTXR
SuperfamilyO95502
Human Protein AtlasENSG00000221890
Peptide AtlasO95502
HPRD14837
IPIIPI00334238   
Protein Interaction databases
DIP (DOE-UCLA)O95502
IntAct (EBI)O95502
FunCoupENSG00000221890
BioGRIDNPTXR
STRING (EMBL)NPTXR
ZODIACNPTXR
Ontologies - Pathways
QuickGOO95502
Ontology : AmiGOintegral component of membrane  metal ion binding  
Ontology : EGO-EBIintegral component of membrane  metal ion binding  
NDEx NetworkNPTXR
Atlas of Cancer Signalling NetworkNPTXR
Wikipedia pathwaysNPTXR
Orthology - Evolution
OrthoDB23467
GeneTree (enSembl)ENSG00000221890
Phylogenetic Trees/Animal Genes : TreeFamNPTXR
HOVERGENO95502
HOGENOMO95502
Homologs : HomoloGeneNPTXR
Homology/Alignments : Family Browser (UCSC)NPTXR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPTXR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPTXR
dbVarNPTXR
ClinVarNPTXR
1000_GenomesNPTXR 
Exome Variant ServerNPTXR
ExAC (Exome Aggregation Consortium)NPTXR (select the gene name)
Genetic variants : HAPMAP23467
Genomic Variants (DGV)NPTXR [DGVbeta]
DECIPHER (Syndromes)22:39214456-39240017  ENSG00000221890
CONAN: Copy Number AnalysisNPTXR 
Mutations
ICGC Data PortalNPTXR 
TCGA Data PortalNPTXR 
Broad Tumor PortalNPTXR
OASIS PortalNPTXR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPTXR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPTXR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPTXR
DgiDB (Drug Gene Interaction Database)NPTXR
DoCM (Curated mutations)NPTXR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPTXR (select a term)
intoGenNPTXR
Cancer3DNPTXR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609474   
Orphanet
MedgenNPTXR
Genetic Testing Registry NPTXR
NextProtO95502 [Medical]
TSGene23467
GENETestsNPTXR
Huge Navigator NPTXR [HugePedia]
snp3D : Map Gene to Disease23467
BioCentury BCIQNPTXR
ClinGenNPTXR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23467
Chemical/Pharm GKB GenePA31740
Clinical trialNPTXR
Miscellaneous
canSAR (ICR)NPTXR (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPTXR
EVEXNPTXR
GoPubMedNPTXR
iHOPNPTXR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:19 CET 2017

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