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NPVF (neuropeptide VF precursor)

Identity

Alias_namesC7orf9
chromosome 7 open reading frame 9
Alias_symbol (synonym)RFRP
Other alias
HGNC (Hugo) NPVF
LocusID (NCBI) 64111
Atlas_Id 70955
Location 7p15.3  [Link to chromosome band 7p15]
Location_base_pair Starts at 25264191 and ends at 25268105 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPVF   13782
Cards
Entrez_Gene (NCBI)NPVF  64111  neuropeptide VF precursor
AliasesC7orf9; RFRP
GeneCards (Weizmann)NPVF
Ensembl hg19 (Hinxton)ENSG00000105954 [Gene_View]  chr7:25264191-25268105 [Contig_View]  NPVF [Vega]
Ensembl hg38 (Hinxton)ENSG00000105954 [Gene_View]  chr7:25264191-25268105 [Contig_View]  NPVF [Vega]
ICGC DataPortalENSG00000105954
TCGA cBioPortalNPVF
AceView (NCBI)NPVF
Genatlas (Paris)NPVF
WikiGenes64111
SOURCE (Princeton)NPVF
Genetics Home Reference (NIH)NPVF
Genomic and cartography
GoldenPath hg19 (UCSC)NPVF  -     chr7:25264191-25268105 -  7p15.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NPVF  -     7p15.3   [Description]    (hg38-Dec_2013)
EnsemblNPVF - 7p15.3 [CytoView hg19]  NPVF - 7p15.3 [CytoView hg38]
Mapping of homologs : NCBINPVF [Mapview hg19]  NPVF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040290 AF330057 AF440392 BC160068 BM714303
RefSeq transcript (Entrez)NM_022150
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)NPVF
Cluster EST : UnigeneHs.60473 [ NCBI ]
CGAP (NCI)Hs.60473
Alternative Splicing GalleryENSG00000105954
Gene ExpressionNPVF [ NCBI-GEO ]   NPVF [ EBI - ARRAY_EXPRESS ]   NPVF [ SEEK ]   NPVF [ MEM ]
Gene Expression Viewer (FireBrowse)NPVF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64111
GTEX Portal (Tissue expression)NPVF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCQ7
Splice isoforms : SwissVarQ9HCQ7
PhosPhoSitePlusQ9HCQ7
Domains : Interpro (EBI)FMRFamide-related/fGRP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NPVF
DMDM Disease mutations64111
Blocks (Seattle)NPVF
SuperfamilyQ9HCQ7
Human Protein AtlasENSG00000105954
Peptide AtlasQ9HCQ7
IPIIPI00005530   IPI00971078   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCQ7
IntAct (EBI)Q9HCQ7
FunCoupENSG00000105954
BioGRIDNPVF
STRING (EMBL)NPVF
ZODIACNPVF
Ontologies - Pathways
QuickGOQ9HCQ7
Ontology : AmiGOextracellular region  neuropeptide signaling pathway  negative regulation of gonadotropin secretion  
Ontology : EGO-EBIextracellular region  neuropeptide signaling pathway  negative regulation of gonadotropin secretion  
NDEx NetworkNPVF
Atlas of Cancer Signalling NetworkNPVF
Wikipedia pathwaysNPVF
Orthology - Evolution
OrthoDB64111
GeneTree (enSembl)ENSG00000105954
Phylogenetic Trees/Animal Genes : TreeFamNPVF
HOVERGENQ9HCQ7
HOGENOMQ9HCQ7
Homologs : HomoloGeneNPVF
Homology/Alignments : Family Browser (UCSC)NPVF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPVF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPVF
dbVarNPVF
ClinVarNPVF
1000_GenomesNPVF 
Exome Variant ServerNPVF
ExAC (Exome Aggregation Consortium)NPVF (select the gene name)
Genetic variants : HAPMAP64111
Genomic Variants (DGV)NPVF [DGVbeta]
DECIPHER (Syndromes)7:25264191-25268105  ENSG00000105954
CONAN: Copy Number AnalysisNPVF 
Mutations
ICGC Data PortalNPVF 
TCGA Data PortalNPVF 
Broad Tumor PortalNPVF
OASIS PortalNPVF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPVF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPVF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPVF
DgiDB (Drug Gene Interaction Database)NPVF
DoCM (Curated mutations)NPVF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPVF (select a term)
intoGenNPVF
Cancer3DNPVF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNPVF
Genetic Testing Registry NPVF
NextProtQ9HCQ7 [Medical]
TSGene64111
GENETestsNPVF
Huge Navigator NPVF [HugePedia]
snp3D : Map Gene to Disease64111
BioCentury BCIQNPVF
ClinGenNPVF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64111
Chemical/Pharm GKB GenePA162398161
Clinical trialNPVF
Miscellaneous
canSAR (ICR)NPVF (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPVF
EVEXNPVF
GoPubMedNPVF
iHOPNPVF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:19 CET 2017

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