Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NPY4R2 (neuropeptide Y receptor Y4-2)

Identity

Alias (NCBI)CH17-360D5.1
NPY4-R
NPY4R
PP1
PPYR1
HGNC (Hugo) NPY4R2
HGNC Alias symbCH17-360D5.1
LocusID (NCBI) 100996758
Atlas_Id 79197
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47921929 and ends at 47923377 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPY4R2   52383
Cards
Entrez_Gene (NCBI)NPY4R2  100996758  neuropeptide Y receptor Y4-2
AliasesCH17-360D5.1; NPY4-R; NPY4R; PP1; 
PPYR1
GeneCards (Weizmann)NPY4R2
Ensembl hg19 (Hinxton)ENSG00000264717 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000264717 [Gene_View]  ENSG00000264717 [Sequence]  chr10:47921929-47923377 [Contig_View]  NPY4R2 [Vega]
ICGC DataPortalENSG00000264717
TCGA cBioPortalNPY4R2
AceView (NCBI)NPY4R2
Genatlas (Paris)NPY4R2
WikiGenes100996758
SOURCE (Princeton)NPY4R2
Genetics Home Reference (NIH)NPY4R2
Genomic and cartography
GoldenPath hg38 (UCSC)NPY4R2  -     chr10:47921929-47923377 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPY4R2  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathNPY4R2 - 10q11.22 [CytoView hg19]  NPY4R2 - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000264717
genome Data Viewer NCBINPY4R2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC096237
RefSeq transcript (Entrez)NM_001278795
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPY4R2
Alternative Splicing GalleryENSG00000264717
Gene ExpressionNPY4R2 [ NCBI-GEO ]   NPY4R2 [ EBI - ARRAY_EXPRESS ]   NPY4R2 [ SEEK ]   NPY4R2 [ MEM ]
Gene Expression Viewer (FireBrowse)NPY4R2 [ Firebrowse - Broad ]
GenevisibleExpression of NPY4R2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996758
GTEX Portal (Tissue expression)NPY4R2
Human Protein AtlasENSG00000264717-NPY4R2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DQD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DQD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DQD5
Splice isoforms : SwissVarP0DQD5
PhosPhoSitePlusP0DQD5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    NPY4_rcpt    NPY_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)NPY4R2
DMDM Disease mutations100996758
Blocks (Seattle)NPY4R2
SuperfamilyP0DQD5
Human Protein Atlas [tissue]ENSG00000264717-NPY4R2 [tissue]
Peptide AtlasP0DQD5
Protein Interaction databases
DIP (DOE-UCLA)P0DQD5
IntAct (EBI)P0DQD5
FunCoupENSG00000264717
BioGRIDNPY4R2
STRING (EMBL)NPY4R2
ZODIACNPY4R2
Ontologies - Pathways
QuickGOP0DQD5
Ontology : AmiGOpancreatic polypeptide receptor activity  pancreatic polypeptide receptor activity  G protein-coupled receptor activity  neuropeptide Y receptor activity  plasma membrane  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway  neuropeptide signaling pathway  membrane  integral component of membrane  peptide hormone binding  
Ontology : EGO-EBIpancreatic polypeptide receptor activity  pancreatic polypeptide receptor activity  G protein-coupled receptor activity  neuropeptide Y receptor activity  plasma membrane  plasma membrane  integral component of plasma membrane  G protein-coupled receptor signaling pathway  G protein-coupled receptor signaling pathway  neuropeptide signaling pathway  membrane  integral component of membrane  peptide hormone binding  
NDEx NetworkNPY4R2
Atlas of Cancer Signalling NetworkNPY4R2
Wikipedia pathwaysNPY4R2
Orthology - Evolution
OrthoDB100996758
GeneTree (enSembl)ENSG00000264717
Phylogenetic Trees/Animal Genes : TreeFamNPY4R2
HOGENOMP0DQD5
Homologs : HomoloGeneNPY4R2
Homology/Alignments : Family Browser (UCSC)NPY4R2
Gene fusions - Rearrangements
Fusion : QuiverNPY4R2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPY4R2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPY4R2
dbVarNPY4R2
ClinVarNPY4R2
1000_GenomesNPY4R2 
Exome Variant ServerNPY4R2
GNOMAD BrowserENSG00000264717
Varsome BrowserNPY4R2
Genetic variants : HAPMAP100996758
Genomic Variants (DGV)NPY4R2 [DGVbeta]
DECIPHERNPY4R2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPY4R2 
Mutations
ICGC Data PortalNPY4R2 
TCGA Data PortalNPY4R2 
Broad Tumor PortalNPY4R2
OASIS PortalNPY4R2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNPY4R2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPY4R2
DgiDB (Drug Gene Interaction Database)NPY4R2
DoCM (Curated mutations)NPY4R2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPY4R2 (select a term)
intoGenNPY4R2
Cancer3DNPY4R2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETNPY4R2
MedgenNPY4R2
Genetic Testing Registry NPY4R2
NextProtP0DQD5 [Medical]
TSGene100996758
GENETestsNPY4R2
Target ValidationNPY4R2
Huge Navigator NPY4R2 [HugePedia]
snp3D : Map Gene to Disease100996758
BioCentury BCIQNPY4R2
ClinGenNPY4R2
Clinical trials, drugs, therapy
Protein Interactions : CTD100996758
Clinical trialNPY4R2
Miscellaneous
canSAR (ICR)NPY4R2 (select the gene name)
HarmonizomeNPY4R2
DataMed IndexNPY4R2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPY4R2
EVEXNPY4R2
GoPubMedNPY4R2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:20:00 CEST 2020

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