Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NPY6R (neuropeptide Y receptor Y6 (pseudogene))

Identity

Alias_symbol (synonym)PP2
NPY1RL
NPY6RP
Other aliasY2B
HGNC (Hugo) NPY6R
LocusID (NCBI) 4888
Atlas_Id 70958
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 137801193 and ends at 137810750 bp from pter ( according tohg38=Dc_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NPY6R   7959
Cards
Entrez_Gene (NCBI)NPY6R  4888  neuropeptide Y receptor Y6 (pseudogene)
AliasesNPY1RL; NPY6RP; PP2; Y2B
GeneCards (Weizmann)NPY6R
Ensembl hg19 (Hinxton)ENSG00000226306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226306 [Gene_View]  chr5:137801193-137810750 [Contig_View]  NPY6R [Vega]
ICGC DataPortalENSG00000226306
TCGA cBioPortalNPY6R
AceView (NCBI)NPY6R
Genatlas (Paris)NPY6R
WikiGenes4888
SOURCE (Princeton)NPY6R
Genetics Home Reference (NIH)NPY6R
Genomic and cartography
GoldenPath hg38 (UCSC)NPY6R  -     chr5:137801193-137810750 +  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NPY6R  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblNPY6R - 5q31.2 [CytoView hg19]  NPY6R - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBINPY6R [Mapview hg19]  NPY6R [Mapview hg38]
OMIM601770   
Gene and transcription
Genbank (Entrez)AK297855 AK299427 D86519 DC357138 U59431
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NPY6R
Cluster EST : UnigeneHs.643466 [ NCBI ]
CGAP (NCI)Hs.643466
Alternative Splicing GalleryENSG00000226306
Gene ExpressionNPY6R [ NCBI-GEO ]   NPY6R [ EBI - ARRAY_EXPRESS ]   NPY6R [ SEEK ]   NPY6R [ MEM ]
Gene Expression Viewer (FireBrowse)NPY6R [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4888
GTEX Portal (Tissue expression)NPY6R
Human Protein AtlasENSG00000226306-NPY6R [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99463   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99463  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99463
Splice isoforms : SwissVarQ99463
PhosPhoSitePlusQ99463
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    NeuroY6_rcpt    NPY_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)NPY6R
DMDM Disease mutations4888
Blocks (Seattle)NPY6R
SuperfamilyQ99463
Human Protein Atlas [tissue]ENSG00000226306-NPY6R [tissue]
Peptide AtlasQ99463
IPIIPI00006178   
Protein Interaction databases
DIP (DOE-UCLA)Q99463
IntAct (EBI)Q99463
FunCoupENSG00000226306
BioGRIDNPY6R
STRING (EMBL)NPY6R
ZODIACNPY6R
Ontologies - Pathways
QuickGOQ99463
Ontology : AmiGOneuropeptide Y receptor activity  G-protein coupled receptor signaling pathway  chemical synaptic transmission  feeding behavior  blood circulation  integral component of membrane  
Ontology : EGO-EBIneuropeptide Y receptor activity  G-protein coupled receptor signaling pathway  chemical synaptic transmission  feeding behavior  blood circulation  integral component of membrane  
NDEx NetworkNPY6R
Atlas of Cancer Signalling NetworkNPY6R
Wikipedia pathwaysNPY6R
Orthology - Evolution
OrthoDB4888
GeneTree (enSembl)ENSG00000226306
Phylogenetic Trees/Animal Genes : TreeFamNPY6R
HOVERGENQ99463
HOGENOMQ99463
Homologs : HomoloGeneNPY6R
Homology/Alignments : Family Browser (UCSC)NPY6R
Gene fusions - Rearrangements
Tumor Fusion PortalNPY6R
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNPY6R [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NPY6R
dbVasNPY6R
ClinVarNPY6R
1000_GenomesNPY6R 
Exome Variant ServerNPY6R
ExAC (Exome Aggregation Consortium)ENSG00000226306
GNOMAD BrowserENSG00000226306
Genetic variants : HAPMAP4888
Genomic Variants (DGV)NPY6R [DGVbeta]
DECIPHERNPY6R [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNPY6R 
Mutations
ICGC Data PortalNPY6R 
TCGA Data PortalNPY6R 
Broad Tumor PortalNPY6R
OASIS PortalNPY6R [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNPY6R  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNPY6R
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NPY6R
DgiDB (Drug Gene Interaction Database)NPY6R
DoCM (Curated mutations)NPY6R (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NPY6R (select a term)
intoGenNPY6R
Cancer3DNPY6R(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601770   
Orphanet
DisGeNETNPY6R
MedgenNPY6R
Genetic Testing Registry NPY6R
NextProtQ99463 [Medical]
TSGene4888
GENETestsNPY6R
Target ValidationNPY6R
Huge Navigator NPY6R [HugePedia]
snp3D : Map Gene to Disease4888
BioCentury BCIQNPY6R
ClinGenNPY6R
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4888
Chemical/Pharm GKB GenePA31743
Clinical trialNPY6R
Miscellaneous
canSAR (ICR)NPY6R (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNPY6R
EVEXNPY6R
GoPubMedNPY6R
iHOPNPY6R
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:12:35 CET 2017

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