NR1D2 (nuclear receptor subfamily 1, group D, member 2)

Identity

Other names	BD73
	EAR-1r
	HZF2
	Hs.37288
	RVR
HGNC	NR1D2
Location	3p24.2
Location_base_pair	Starts at 23961810 and ends at 23996241 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	NR1D2   7963
Entrez_Gene	NR1D2  9975  nuclear receptor subfamily 1, group D, member 2
	Cards
GeneCards	NR1D2
Ensembl	ENSG00000174738 [Gene_View]  NR1D2 [Vega]
Genatlas	NR1D2
	Genomic and cartography
GoldenPath	NR1D2  -  3p24.2   chr3:23961810-23996241 +  3p24.2   [Description]    (hg18-March_2006)
Ensembl	NR1D2 - 3p24.2 [CytoView]
NCBI	Mapview
OMIM	602304 Disease map [OMIM]
HomoloGene	NR1D2
	Gene and transcription
Genbank	AB209091 [ ENTREZ ]
Genbank	AK313464 [ ENTREZ ]
Genbank	BC015929 [ ENTREZ ]
Genbank	BC045613 [ ENTREZ ]
Genbank	BC070035 [ ENTREZ ]
RefSeq	NM_005126 [ SRS ]    NM_005126 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
CCDS	NR1D2 CCDS - NCBI
AceView	NR1D2 AceView - NCBI
Unigene	Hs.37288 [ SRS ]    Hs.37288 [ NCBI ]
Fast-db	3040 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q14995 [ SRS]    Q14995 [ EXPASY ]     Q14995 [ INTERPRO ]     Q14995 [ UNIPROT ] Q14995 [ VarSplice FASTA ]
Prosite	PS00031 NUCLEAR_REC_DBD_1 [ SRS ]    PS00031 NUCLEAR_REC_DBD_1 [ Expasy ]
Prosite	PS51030 NUCLEAR_REC_DBD_2 [ SRS ]    PS51030 NUCLEAR_REC_DBD_2 [ Expasy ]
Interpro	IPR008946 Nucl_hormone_rcpt_ligand-bd [ SRS ]    IPR008946 Nucl_hormone_rcpt_ligand-bd [ EBI ]
Interpro	IPR000536 Nucl_hrmn_rcpt_lig-bd_core [ SRS ]    IPR000536 Nucl_hrmn_rcpt_lig-bd_core [ EBI ]
Interpro	IPR001723 Str_hrmn_rcpt [ SRS ]    IPR001723 Str_hrmn_rcpt [ EBI ]
Interpro	IPR000324 VitD_rcpt [ SRS ]    IPR000324 VitD_rcpt [ EBI ]
Interpro	IPR001628 Znf_hrmn_rcpt [ SRS ]    IPR001628 Znf_hrmn_rcpt [ EBI ]
Interpro	IPR013088 Znf_NHR/GATA [ SRS ]    IPR013088 Znf_NHR/GATA [ EBI ]
CluSTr	Q14995
Pfam	PF00104 Hormone_recep [ SRS ]    PF00104 Hormone_recep [ Sanger ]    pfam00104 [ NCBI-CDD ]
Pfam	PF00105 zf-C4 [ SRS ]    PF00105 zf-C4 [ Sanger ]    pfam00105 [ NCBI-CDD ]
Smart	SM00430 HOLI [EMBL]
Smart	SM00399 ZnF_C4 [EMBL]
Prodom	PD000035 Znf_C4steroid[INRA-Toulouse]
Prodom	Q14995 NR1D2_HUMAN [ Domain structure ]   Q14995 NR1D2_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q14995
PDB	2V0V [ SRS ]    2V0V [ PdbSum ],   2V0V [ IMB ]   2V0V [ RSDB ]
PDB	2V7C [ SRS ]    2V7C [ PdbSum ],   2V7C [ IMB ]   2V7C [ RSDB ]
HPRD	03809
	Protein Interaction databases
DIP	Q14995
IntAct	Q14995
	Polymorphism : SNP, mutations, diseases
OMIM	602304    [ map ]
GENETests	602304
SNP	NR1D2 [dbSNP-NCBI]
SNP	NM_005126 [SNP-NCI]
SNP	NR1D2 [GeneSNPs - Utah]  NR1D2] [HGBASE - SRS]
HAPMAP	NR1D2 [HAPMAP]
COSMIC	NR1D2 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	NR1D2
Genetic Association	NR1D2
CDC HuGE	NR1D2
	General knowledge
Family Browser	NR1D2 [UCSC Family Browser]
SOURCE	NM_005126
SMD	Hs.37288
SAGE	Hs.37288
GO	transcription factor activity [Amigo]  transcription factor activity
GO	steroid hormone receptor activity [Amigo]  steroid hormone receptor activity
GO	ligand-dependent nuclear receptor activity [Amigo]  ligand-dependent nuclear receptor activity
GO	nucleus [Amigo]  nucleus
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	zinc ion binding [Amigo]  zinc ion binding
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	NR1D2
TreeFam	NR1D2
CTD	9975 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	NR1D2 Related clones (RZPD - Berlin)
	PubMed
PubMed	10 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:00:50 2008