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NR1D2 (nuclear receptor subfamily 1, group D, member 2)

Identity

Other namesBD73
EAR-1R
RVR
HGNC (Hugo) NR1D2
LocusID (NCBI) 9975
Location 3p24.2
Location_base_pair Starts at 23987612 and ends at 24022109 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NR1D2   7963
Entrez_Gene (NCBI)NR1D2  9975  nuclear receptor subfamily 1, group D, member 2
Cards
GeneCards (Weizmann)NR1D2
Ensembl (Hinxton)ENSG00000174738 [Gene_View]  chr3:23987612-24022109 [Contig_View]  NR1D2 [Vega]
AceView (NCBI)NR1D2
Genatlas (Paris)NR1D2
SOURCE (Stanford)NM_001145425 NM_005126
Genomic and cartography
GoldenPath (UCSC)NR1D2  -  3p24.2   chr3:23987612-24022109 +  3p24.2   [Description]    (hg19-Feb_2009)
EnsemblNR1D2 - 3p24.2 [CytoView]
Mapping of homologs : NCBINR1D2 [Mapview]
OMIM602304   
Gene and transcription
Genbank (Entrez)AB209091 AB307693 AK293273 AK301925 AK313464
RefSeq transcript (SRS)NM_001145425 NM_005126
RefSeq transcript (Entrez)NM_001145425 NM_005126
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)NR1D2
Cluster EST : UnigeneHs.37288 [ SRS ] Hs.37288 [ NCBI ]
CGAP (NCI)Hs.37288
Alternative Splicing : Fast-db (Paris)GSHG0020650
Alternative Splicing GalleryENSG00000174738
Gene ExpressionNR1D2 [ NCBI-GEO ]   NR1D2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14995 (SRS) Q14995 (Uniprot)
NextProtQ14995
With graphics : InterProQ14995
Splice isoforms : SwissVarQ14995(Swissvar)
Domaine pattern : Prosite (SRS)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (SRS)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Related proteins : CluSTrQ14995
Domain families : Pfam (SRS)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM9975
Blocks (Seattle)Q14995
PDB (SRS)2V0V    2V7C    3CQV   
PDB (PDBSum)2V0V    2V7C    3CQV   
PDB (IMB)2V0V    2V7C    3CQV   
PDB (RSDB)2V0V    2V7C    3CQV   
Human Protein AtlasENSG00000174738
HPRD03809
IPIIPI00788022   IPI00816040   IPI00923391   IPI00431747   
Protein Interaction databases
DIP (DOE-UCLA)Q14995
IntAct (EBI)Q14995
FunCoupENSG00000174738
REACTOMENR1D2
Protein Interaction Database9975
BioGRIDNR1D2
InParanoidQ14995
Interologous Interaction database Q14995
IntegromeDBNR1D2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NR1D2
SNP (GeneSNP Utah)NR1D2
SNP : HGBaseNR1D2
Genetic variants : HAPMAPNR1D2
Somatic Mutations in Cancer : COSMICNR1D2 
CONAN: Copy Number AnalysisNR1D2 
Mutations and Diseases : HGMDNR1D2
OMIM602304   
GENETests602304   
Disease Genetic AssociationNR1D2
Huge Navigator NR1D2 [HugePedia]  NR1D2 [HugeCancerGEM]
Genomic VariantsNR1D2  NR1D2 [DGVbeta]
snp3D : Map Gene to Disease9975
General knowledge
Homologs : HomoloGeneNR1D2
Homology/Alignments : Family Browser (UCSC)NR1D2
Phylogenetic Trees/Animal Genes : TreeFamNR1D2
Chemical/Protein Interactions : CTD9975
Chemical/Pharm GKB GenePA31749
Clinical trialNR1D2
Cancer Resource (Charite)ENSG00000174738
Ontology : AmiGOsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleus  nucleoplasm  regulation of transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  zinc ion binding  gene expression  intracellular receptor mediated signaling pathway  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBIsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleus  nucleoplasm  regulation of transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  zinc ion binding  gene expression  intracellular receptor mediated signaling pathway  sequence-specific DNA binding  metal ion binding  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneNR1D2
iHOPNR1D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:15 CEST 2013
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