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NR2C2AP (nuclear receptor 2C2 associated protein)

Identity

Alias_symbol (synonym)TRA16
Other alias
HGNC (Hugo) NR2C2AP
LocusID (NCBI) 126382
Atlas_Id 53797
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19201411 and ends at 19203429 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NR2C2AP   30763
Cards
Entrez_Gene (NCBI)NR2C2AP  126382  nuclear receptor 2C2 associated protein
AliasesTRA16
GeneCards (Weizmann)NR2C2AP
Ensembl hg19 (Hinxton)ENSG00000184162 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184162 [Gene_View]  chr19:19201411-19203429 [Contig_View]  NR2C2AP [Vega]
ICGC DataPortalENSG00000184162
TCGA cBioPortalNR2C2AP
AceView (NCBI)NR2C2AP
Genatlas (Paris)NR2C2AP
WikiGenes126382
SOURCE (Princeton)NR2C2AP
Genetics Home Reference (NIH)NR2C2AP
Genomic and cartography
GoldenPath hg38 (UCSC)NR2C2AP  -     chr19:19201411-19203429 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NR2C2AP  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblNR2C2AP - 19p13.11 [CytoView hg19]  NR2C2AP - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBINR2C2AP [Mapview hg19]  NR2C2AP [Mapview hg38]
OMIM608719   
Gene and transcription
Genbank (Entrez)AA588235 AK301426 AY101377 BC057837 CF993811
RefSeq transcript (Entrez)NM_001300945 NM_176880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NR2C2AP
Cluster EST : UnigeneHs.732708 [ NCBI ]
CGAP (NCI)Hs.732708
Alternative Splicing GalleryENSG00000184162
Gene ExpressionNR2C2AP [ NCBI-GEO ]   NR2C2AP [ EBI - ARRAY_EXPRESS ]   NR2C2AP [ SEEK ]   NR2C2AP [ MEM ]
Gene Expression Viewer (FireBrowse)NR2C2AP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126382
GTEX Portal (Tissue expression)NR2C2AP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WQ0
Splice isoforms : SwissVarQ86WQ0
PhosPhoSitePlusQ86WQ0
Domains : Interpro (EBI)Galactose-bd-like    NR2C2AP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NR2C2AP
DMDM Disease mutations126382
Blocks (Seattle)NR2C2AP
SuperfamilyQ86WQ0
Human Protein AtlasENSG00000184162
Peptide AtlasQ86WQ0
HPRD16376
IPIIPI00791711   IPI01012822   IPI01011671   
Protein Interaction databases
DIP (DOE-UCLA)Q86WQ0
IntAct (EBI)Q86WQ0
FunCoupENSG00000184162
BioGRIDNR2C2AP
STRING (EMBL)NR2C2AP
ZODIACNR2C2AP
Ontologies - Pathways
QuickGOQ86WQ0
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  transcription initiation from RNA polymerase II promoter  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  transcription initiation from RNA polymerase II promoter  extracellular exosome  
NDEx NetworkNR2C2AP
Atlas of Cancer Signalling NetworkNR2C2AP
Wikipedia pathwaysNR2C2AP
Orthology - Evolution
OrthoDB126382
GeneTree (enSembl)ENSG00000184162
Phylogenetic Trees/Animal Genes : TreeFamNR2C2AP
HOVERGENQ86WQ0
HOGENOMQ86WQ0
Homologs : HomoloGeneNR2C2AP
Homology/Alignments : Family Browser (UCSC)NR2C2AP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNR2C2AP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NR2C2AP
dbVarNR2C2AP
ClinVarNR2C2AP
1000_GenomesNR2C2AP 
Exome Variant ServerNR2C2AP
ExAC (Exome Aggregation Consortium)NR2C2AP (select the gene name)
Genetic variants : HAPMAP126382
Genomic Variants (DGV)NR2C2AP [DGVbeta]
DECIPHERNR2C2AP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNR2C2AP 
Mutations
ICGC Data PortalNR2C2AP 
TCGA Data PortalNR2C2AP 
Broad Tumor PortalNR2C2AP
OASIS PortalNR2C2AP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNR2C2AP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNR2C2AP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NR2C2AP
DgiDB (Drug Gene Interaction Database)NR2C2AP
DoCM (Curated mutations)NR2C2AP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NR2C2AP (select a term)
intoGenNR2C2AP
Cancer3DNR2C2AP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608719   
Orphanet
MedgenNR2C2AP
Genetic Testing Registry NR2C2AP
NextProtQ86WQ0 [Medical]
TSGene126382
GENETestsNR2C2AP
Target ValidationNR2C2AP
Huge Navigator NR2C2AP [HugePedia]
snp3D : Map Gene to Disease126382
BioCentury BCIQNR2C2AP
ClinGenNR2C2AP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126382
Chemical/Pharm GKB GenePA162398172
Clinical trialNR2C2AP
Miscellaneous
canSAR (ICR)NR2C2AP (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNR2C2AP
EVEXNR2C2AP
GoPubMedNR2C2AP
iHOPNR2C2AP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:21 CEST 2017

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