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NR2E3 (nuclear receptor subfamily 2, group E, member 3)

Identity

Other namesESCS
PNR
RNR
RP37
rd7
HGNC (Hugo) NR2E3
LocusID (NCBI) 10002
Location 15q23
Location_base_pair Starts at 72102888 and ends at 72110597 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)NR2E3   7974
Cards
Entrez_Gene (NCBI)NR2E3  10002  nuclear receptor subfamily 2, group E, member 3
GeneCards (Weizmann)NR2E3
Ensembl (Hinxton) [Gene_View]  chr15:72102888-72110597 [Contig_View]  NR2E3 [Vega]
cBioPortalNR2E3
AceView (NCBI)NR2E3
Genatlas (Paris)NR2E3
WikiGenes10002
SOURCE (Princeton)NM_001281446 NM_014249 NM_016346
Genomic and cartography
GoldenPath (UCSC)NR2E3  -  15q23   chr15:72102888-72110597 +  15q23   [Description]    (hg19-Feb_2009)
EnsemblNR2E3 - 15q23 [CytoView]
Mapping of homologs : NCBINR2E3 [Mapview]
OMIM268100   604485   611131   
Gene and transcription
Genbank (Entrez)AB307710 AF121129 AF148128 AL711747 AW080977
RefSeq transcript (Entrez)NM_001281446 NM_014249 NM_016346
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_009113 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)NR2E3
Cluster EST : UnigeneHs.636007 [ NCBI ]
CGAP (NCI)Hs.636007
Alternative Splicing : Fast-db (Paris)GSHG0009983
Gene ExpressionNR2E3 [ NCBI-GEO ]     NR2E3 [ SEEK ]   NR2E3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5X4 (Uniprot)
NextProtQ9Y5X4  [Medical]
With graphics : InterProQ9Y5X4
Splice isoforms : SwissVarQ9Y5X4 (Swissvar)
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd [organisation]   Nucl_hrmn_rcpt_lig-bd_core [organisation]   Retinoid-X_rcpt/HNF4 [organisation]   Str_hrmn_rcpt [organisation]   Znf_hrmn_rcpt [organisation]   Znf_NHR/GATA [organisation]  
Related proteins : CluSTrQ9Y5X4
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM Disease mutations10002
Blocks (Seattle)Q9Y5X4
PDB (SRS)4LOG   
PDB (PDBSum)4LOG   
PDB (IMB)4LOG   
PDB (RSDB)4LOG   
Peptide AtlasQ9Y5X4
HPRD05132
IPIIPI00001888   IPI00215922   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5X4
IntAct (EBI)Q9Y5X4
BioGRIDNR2E3
InParanoidQ9Y5X4
Interologous Interaction database Q9Y5X4
IntegromeDBNR2E3
STRING (EMBL)NR2E3
Ontologies - Pathways
Ontology : AmiGOsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  signal transduction  visual perception  phototransduction  zinc ion binding  gene expression  intracellular receptor signaling pathway  steroid hormone mediated signaling pathway  sequence-specific DNA binding  
Ontology : EGO-EBIsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  signal transduction  visual perception  phototransduction  zinc ion binding  gene expression  intracellular receptor signaling pathway  steroid hormone mediated signaling pathway  sequence-specific DNA binding  
Protein Interaction DatabaseNR2E3
Wikipedia pathwaysNR2E3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NR2E3
snp3D : Map Gene to Disease10002
SNP (GeneSNP Utah)NR2E3
SNP : HGBaseNR2E3
Genetic variants : HAPMAPNR2E3
Exome VariantNR2E3
1000_GenomesNR2E3 
Somatic Mutations in Cancer : COSMICNR2E3 
CONAN: Copy Number AnalysisNR2E3 
Mutations and Diseases : HGMDNR2E3
Mutations and Diseases : intOGenNR2E3
Genomic VariantsNR2E3  NR2E3 [DGVbeta]
dbVarNR2E3
ClinVarNR2E3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM268100    604485    611131   
MedgenNR2E3
GENETestsNR2E3
Disease Genetic AssociationNR2E3
Huge Navigator NR2E3 [HugePedia]  NR2E3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneNR2E3
Homology/Alignments : Family Browser (UCSC)NR2E3
Phylogenetic Trees/Animal Genes : TreeFamNR2E3
Chemical/Protein Interactions : CTD10002
Chemical/Pharm GKB GenePA31757
Clinical trialNR2E3
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
CoreMineNR2E3
iHOPNR2E3
OncoSearchNR2E3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:07:56 CEST 2014

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