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NR2E3 (nuclear receptor subfamily 2, group E, member 3)

Identity

Other namesESCS
PNR
RNR
RP37
rd7
HGNC (Hugo) NR2E3
LocusID (NCBI) 10002
Location 15q23
Location_base_pair Starts at 72102894 and ends at 72110597 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)NR2E3   7974
Entrez_Gene (NCBI)NR2E3  10002  nuclear receptor subfamily 2, group E, member 3
Cards
GeneCards (Weizmann)NR2E3
Ensembl (Hinxton) [Gene_View]  chr15:72102894-72110597 [Contig_View]  NR2E3 [Vega]
AceView (NCBI)NR2E3
Genatlas (Paris)NR2E3
SOURCE (Stanford)NM_014249 NM_016346
Genomic and cartography
GoldenPath (UCSC)NR2E3  -  15q23   chr15:72102894-72110597 +  15q23   [Description]    (hg19-Feb_2009)
EnsemblNR2E3 - 15q23 [CytoView]
Mapping of homologs : NCBINR2E3 [Mapview]
OMIM268100   604485   611131   
Gene and transcription
Genbank (Entrez)AB307710 AF121129 AF148128 BC041421 HQ692847
RefSeq transcript (SRS)NM_014249 NM_016346
RefSeq transcript (Entrez)NM_014249 NM_016346
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NG_009113 NT_010194 NW_001838218 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NG_009113 NT_010194 NW_001838218 NW_004078084
Consensus coding sequences : CCDS (NCBI)NR2E3
Cluster EST : UnigeneHs.187354 [ SRS ] Hs.187354 [ NCBI ]
CGAP (NCI)Hs.187354
Alternative Splicing : Fast-db (Paris)GSHG0009983
Gene ExpressionNR2E3 [ NCBI-GEO ]   NR2E3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5X4 (SRS) Q9Y5X4 (Uniprot)
NextProtQ9Y5X4
With graphics : InterProQ9Y5X4
Splice isoforms : SwissVarQ9Y5X4(Swissvar)
Domaine pattern : Prosite (SRS)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (SRS)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Retinoid-X_rcpt/HNF4    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Retinoid-X_rcpt/HNF4    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Related proteins : CluSTrQ9Y5X4
Domain families : Pfam (SRS)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM10002
Blocks (Seattle)Q9Y5X4
HPRD05132
IPIIPI00001888   IPI00215922   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5X4
IntAct (EBI)Q9Y5X4
REACTOMENR2E3
Protein Interaction Database10002
BioGRIDNR2E3
InParanoidQ9Y5X4
Interologous Interaction database Q9Y5X4
IntegromeDBNR2E3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NR2E3
SNP (GeneSNP Utah)NR2E3
SNP : HGBaseNR2E3
Genetic variants : HAPMAPNR2E3
Somatic Mutations in Cancer : COSMICNR2E3 
CONAN: Copy Number AnalysisNR2E3 
Mutations and Diseases : HGMDNR2E3
OMIM268100    604485    611131   
GENETests268100    604485    611131   
Disease Genetic AssociationNR2E3
Huge Navigator NR2E3 [HugePedia]  NR2E3 [HugeCancerGEM]
Genomic VariantsNR2E3  NR2E3 [DGVbeta]
snp3D : Map Gene to Disease10002
General knowledge
Homologs : HomoloGeneNR2E3
Homology/Alignments : Family Browser (UCSC)NR2E3
Phylogenetic Trees/Animal Genes : TreeFamNR2E3
Chemical/Protein Interactions : CTD10002
Chemical/Pharm GKB GenePA31757
Clinical trialNR2E3
Ontology : AmiGOsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  signal transduction  visual perception  phototransduction  zinc ion binding  gene expression  intracellular receptor mediated signaling pathway  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBIsteroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  signal transduction  visual perception  phototransduction  zinc ion binding  gene expression  intracellular receptor mediated signaling pathway  sequence-specific DNA binding  metal ion binding  
Other databases
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
PubGeneNR2E3
iHOPNR2E3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:23:50 CEST 2013
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