Atlas of Genetics and Cytogenetics in Oncology and Haematology

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NR6A1 (nuclear receptor subfamily 6, group A, member 1)

Identity

Other namesGCNF
GCNF1
NR61
RTR
HGNC (Hugo) NR6A1
LocusID (NCBI) 2649
Location 9q33.3
Location_base_pair Starts at 127284703 and ends at 127533576 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)NR6A1   7985
Entrez_Gene (NCBI)NR6A1  2649  nuclear receptor subfamily 6, group A, member 1
Cards
GeneCards (Weizmann)NR6A1
Ensembl (Hinxton)ENSG00000148200 [Gene_View]  chr9:127284703-127533576 [Contig_View]  NR6A1 [Vega]
AceView (NCBI)NR6A1
Genatlas (Paris)NR6A1
SOURCE (Stanford)NM_001489 NM_033334 NM_033335
Genomic and cartography
GoldenPath (UCSC)NR6A1  -  9q33.3   chr9:127284703-127533576 -  9q33.3   [Description]    (hg19-Feb_2009)
EnsemblNR6A1 - 9q33.3 [CytoView]
Mapping of homologs : NCBINR6A1 [Mapview]
OMIM602778   
Gene and transcription
Genbank (Entrez)AF004291 BC030600 BC042395 BC042406 HQ692858
RefSeq transcript (SRS)NM_001489 NM_033334 NM_033335
RefSeq transcript (Entrez)NM_001489 NM_033334 NM_033335
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004078058
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839239 NW_004078058
Consensus coding sequences : CCDS (NCBI)NR6A1
Cluster EST : UnigeneHs.586460 [ SRS ] Hs.586460 [ NCBI ]
CGAP (NCI)Hs.586460
Alternative Splicing : Fast-db (Paris)GSHG0031149
Alternative Splicing GalleryENSG00000148200
Gene ExpressionNR6A1 [ NCBI-GEO ]   NR6A1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15406 (SRS) Q15406 (Uniprot)
NextProtQ15406
With graphics : InterProQ15406
Splice isoforms : SwissVarQ15406(Swissvar)
Domaine pattern : Prosite (SRS)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (SRS)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Related proteins : CluSTrQ15406
Domain families : Pfam (SRS)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM2649
Blocks (Seattle)Q15406
Human Protein AtlasENSG00000148200
HPRD04147
IPIIPI00017258   IPI00220041   IPI00413606   IPI00743885   IPI00848326   
Protein Interaction databases
DIP (DOE-UCLA)Q15406
IntAct (EBI)Q15406
FunCoupENSG00000148200
REACTOMENR6A1
Protein Interaction Database2649
BioGRIDNR6A1
InParanoidQ15406
Interologous Interaction database Q15406
IntegromeDBNR6A1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)NR6A1
SNP (GeneSNP Utah)NR6A1
SNP : HGBaseNR6A1
Genetic variants : HAPMAPNR6A1
Somatic Mutations in Cancer : COSMICNR6A1 
CONAN: Copy Number AnalysisNR6A1 
Mutations and Diseases : HGMDNR6A1
OMIM602778   
GENETests602778   
Disease Genetic AssociationNR6A1
Huge Navigator NR6A1 [HugePedia]  NR6A1 [HugeCancerGEM]
Genomic VariantsNR6A1  NR6A1 [DGVbeta]
snp3D : Map Gene to Disease2649
General knowledge
Homologs : HomoloGeneNR6A1
Homology/Alignments : Family Browser (UCSC)NR6A1
Phylogenetic Trees/Animal Genes : TreeFamNR6A1
Chemical/Protein Interactions : CTD2649
Chemical/Pharm GKB GenePA31766
Clinical trialNR6A1
Cancer Resource (Charite)ENSG00000148200
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleoplasm  transcription factor complex  transcription initiation from RNA polymerase II promoter  gamete generation  spermatogenesis  zinc ion binding  cell proliferation  gene expression  intracellular receptor mediated signaling pathway  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleoplasm  transcription factor complex  transcription initiation from RNA polymerase II promoter  gamete generation  spermatogenesis  zinc ion binding  cell proliferation  gene expression  intracellular receptor mediated signaling pathway  protein homodimerization activity  sequence-specific DNA binding  metal ion binding  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneNR6A1
iHOPNR6A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:20 CEST 2013
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