Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

NRAP (nebulin related anchoring protein)

Identity

Alias_namesnebulin-related anchoring protein
Other aliasN-RAP
HGNC (Hugo) NRAP
LocusID (NCBI) 4892
Atlas_Id 70962
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 113588824 and ends at 113664070 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRAP   7988
Cards
Entrez_Gene (NCBI)NRAP  4892  nebulin related anchoring protein
AliasesN-RAP
GeneCards (Weizmann)NRAP
Ensembl hg19 (Hinxton)ENSG00000197893 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197893 [Gene_View]  chr10:113588824-113664070 [Contig_View]  NRAP [Vega]
ICGC DataPortalENSG00000197893
TCGA cBioPortalNRAP
AceView (NCBI)NRAP
Genatlas (Paris)NRAP
WikiGenes4892
SOURCE (Princeton)NRAP
Genetics Home Reference (NIH)NRAP
Genomic and cartography
GoldenPath hg38 (UCSC)NRAP  -     chr10:113588824-113664070 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRAP  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblNRAP - 10q25.3 [CytoView hg19]  NRAP - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBINRAP [Mapview hg19]  NRAP [Mapview hg38]
OMIM602873   
Gene and transcription
Genbank (Entrez)AF542553 AK056605 AK056969 AK096875 AK096886
RefSeq transcript (Entrez)NM_001261463 NM_001322945 NM_006175 NM_198060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRAP
Cluster EST : UnigeneHs.268788 [ NCBI ]
CGAP (NCI)Hs.268788
Alternative Splicing GalleryENSG00000197893
Gene ExpressionNRAP [ NCBI-GEO ]   NRAP [ EBI - ARRAY_EXPRESS ]   NRAP [ SEEK ]   NRAP [ MEM ]
Gene Expression Viewer (FireBrowse)NRAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4892
GTEX Portal (Tissue expression)NRAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VF7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VF7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VF7
Splice isoforms : SwissVarQ86VF7
PhosPhoSitePlusQ86VF7
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)    NEBULIN (PS51216)   
Domains : Interpro (EBI)Nebulin    Nebulin_repeat    Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)    Nebulin (PF00880)   
Domain families : Pfam (NCBI)pfam00412    pfam00880   
Domain families : Smart (EMBL)LIM (SM00132)  NEBU (SM00227)  
Conserved Domain (NCBI)NRAP
DMDM Disease mutations4892
Blocks (Seattle)NRAP
SuperfamilyQ86VF7
Human Protein AtlasENSG00000197893
Peptide AtlasQ86VF7
HPRD04189
IPIIPI00745227   IPI00398162   IPI00478974   IPI00786896   IPI00903038   IPI00382390   IPI00477880   
Protein Interaction databases
DIP (DOE-UCLA)Q86VF7
IntAct (EBI)Q86VF7
FunCoupENSG00000197893
BioGRIDNRAP
STRING (EMBL)NRAP
ZODIACNRAP
Ontologies - Pathways
QuickGOQ86VF7
Ontology : AmiGOactin binding  actin binding  protein binding  fascia adherens  muscle tendon junction  biological_process  zinc ion binding  muscle alpha-actinin binding  
Ontology : EGO-EBIactin binding  actin binding  protein binding  fascia adherens  muscle tendon junction  biological_process  zinc ion binding  muscle alpha-actinin binding  
NDEx NetworkNRAP
Atlas of Cancer Signalling NetworkNRAP
Wikipedia pathwaysNRAP
Orthology - Evolution
OrthoDB4892
GeneTree (enSembl)ENSG00000197893
Phylogenetic Trees/Animal Genes : TreeFamNRAP
HOVERGENQ86VF7
HOGENOMQ86VF7
Homologs : HomoloGeneNRAP
Homology/Alignments : Family Browser (UCSC)NRAP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRAP
dbVarNRAP
ClinVarNRAP
1000_GenomesNRAP 
Exome Variant ServerNRAP
ExAC (Exome Aggregation Consortium)NRAP (select the gene name)
Genetic variants : HAPMAP4892
Genomic Variants (DGV)NRAP [DGVbeta]
DECIPHERNRAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRAP 
Mutations
ICGC Data PortalNRAP 
TCGA Data PortalNRAP 
Broad Tumor PortalNRAP
OASIS PortalNRAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRAP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRAP
DgiDB (Drug Gene Interaction Database)NRAP
DoCM (Curated mutations)NRAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRAP (select a term)
intoGenNRAP
Cancer3DNRAP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602873   
Orphanet
MedgenNRAP
Genetic Testing Registry NRAP
NextProtQ86VF7 [Medical]
TSGene4892
GENETestsNRAP
Target ValidationNRAP
Huge Navigator NRAP [HugePedia]
snp3D : Map Gene to Disease4892
BioCentury BCIQNRAP
ClinGenNRAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4892
Chemical/Pharm GKB GenePA31767
Clinical trialNRAP
Miscellaneous
canSAR (ICR)NRAP (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRAP
EVEXNRAP
GoPubMedNRAP
iHOPNRAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:32:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.