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NRARP (NOTCH-regulated ankyrin repeat protein)

Identity

Alias_symbol (synonym)MGC61598
Other alias-
HGNC (Hugo) NRARP
LocusID (NCBI) 441478
Atlas_Id 53695
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137299631 and ends at 137302251 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRARP   33843
Cards
Entrez_Gene (NCBI)NRARP  441478  NOTCH-regulated ankyrin repeat protein
Aliases
GeneCards (Weizmann)NRARP
Ensembl hg19 (Hinxton)ENSG00000198435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198435 [Gene_View]  chr9:137299631-137302251 [Contig_View]  NRARP [Vega]
ICGC DataPortalENSG00000198435
TCGA cBioPortalNRARP
AceView (NCBI)NRARP
Genatlas (Paris)NRARP
WikiGenes441478
SOURCE (Princeton)NRARP
Genetics Home Reference (NIH)NRARP
Genomic and cartography
GoldenPath hg38 (UCSC)NRARP  -     chr9:137299631-137302251 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRARP  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblNRARP - 9q34.3 [CytoView hg19]  NRARP - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBINRARP [Mapview hg19]  NRARP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ420434 BC053618 CB066921 CB132749 CK819901
RefSeq transcript (Entrez)NM_001004354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRARP
Cluster EST : UnigeneHs.732282 [ NCBI ]
CGAP (NCI)Hs.732282
Alternative Splicing GalleryENSG00000198435
Gene ExpressionNRARP [ NCBI-GEO ]   NRARP [ EBI - ARRAY_EXPRESS ]   NRARP [ SEEK ]   NRARP [ MEM ]
Gene Expression Viewer (FireBrowse)NRARP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441478
GTEX Portal (Tissue expression)NRARP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K4
Splice isoforms : SwissVarQ7Z6K4
PhosPhoSitePlusQ7Z6K4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domain families : Pfam (Sanger)Ank_2 (PF12796)   
Domain families : Pfam (NCBI)pfam12796   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)NRARP
DMDM Disease mutations441478
Blocks (Seattle)NRARP
SuperfamilyQ7Z6K4
Human Protein AtlasENSG00000198435
Peptide AtlasQ7Z6K4
HPRD17564
IPIIPI00456834   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K4
IntAct (EBI)Q7Z6K4
FunCoupENSG00000198435
BioGRIDNRARP
STRING (EMBL)NRARP
ZODIACNRARP
Ontologies - Pathways
QuickGOQ7Z6K4
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  branching involved in blood vessel morphogenesis  positive regulation of endothelial cell proliferation  blood vessel endothelial cell proliferation involved in sprouting angiogenesis  Notch signaling pathway  somite rostral/caudal axis specification  negative regulation of T cell differentiation  negative regulation of Notch signaling pathway  positive regulation of canonical Wnt signaling pathway  negative regulation of Notch signaling pathway involved in somitogenesis  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  branching involved in blood vessel morphogenesis  positive regulation of endothelial cell proliferation  blood vessel endothelial cell proliferation involved in sprouting angiogenesis  Notch signaling pathway  somite rostral/caudal axis specification  negative regulation of T cell differentiation  negative regulation of Notch signaling pathway  positive regulation of canonical Wnt signaling pathway  negative regulation of Notch signaling pathway involved in somitogenesis  
NDEx NetworkNRARP
Atlas of Cancer Signalling NetworkNRARP
Wikipedia pathwaysNRARP
Orthology - Evolution
OrthoDB441478
GeneTree (enSembl)ENSG00000198435
Phylogenetic Trees/Animal Genes : TreeFamNRARP
HOVERGENQ7Z6K4
HOGENOMQ7Z6K4
Homologs : HomoloGeneNRARP
Homology/Alignments : Family Browser (UCSC)NRARP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRARP
dbVarNRARP
ClinVarNRARP
1000_GenomesNRARP 
Exome Variant ServerNRARP
ExAC (Exome Aggregation Consortium)NRARP (select the gene name)
Genetic variants : HAPMAP441478
Genomic Variants (DGV)NRARP [DGVbeta]
DECIPHERNRARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRARP 
Mutations
ICGC Data PortalNRARP 
TCGA Data PortalNRARP 
Broad Tumor PortalNRARP
OASIS PortalNRARP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRARP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRARP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRARP
DgiDB (Drug Gene Interaction Database)NRARP
DoCM (Curated mutations)NRARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRARP (select a term)
intoGenNRARP
Cancer3DNRARP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNRARP
Genetic Testing Registry NRARP
NextProtQ7Z6K4 [Medical]
TSGene441478
GENETestsNRARP
Target ValidationNRARP
Huge Navigator NRARP [HugePedia]
snp3D : Map Gene to Disease441478
BioCentury BCIQNRARP
ClinGenNRARP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441478
Chemical/Pharm GKB GenePA164724205
Clinical trialNRARP
Miscellaneous
canSAR (ICR)NRARP (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRARP
EVEXNRARP
GoPubMedNRARP
iHOPNRARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:47:24 CEST 2017

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