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NRBF2 (nuclear receptor binding factor 2)

Identity

Alias_symbol (synonym)DKFZp564C1664
FLJ30395
COPR1
COPR2
Other aliasCOPR
NRBF-2
HGNC (Hugo) NRBF2
LocusID (NCBI) 29982
Atlas_Id 55441
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 64893007 and ends at 64914791 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
JMJD1C (10q21.3) / NRBF2 (10q21.3)NRBF2 (10q21.3) / CYP26A1 (10q23.33)NRBF2 (10q21.3) / RAPH1 (2q33.2)
NRBF2 (10q21.3) / RNF169 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRBF2   19692
Cards
Entrez_Gene (NCBI)NRBF2  29982  nuclear receptor binding factor 2
AliasesCOPR; COPR1; COPR2; NRBF-2
GeneCards (Weizmann)NRBF2
Ensembl hg19 (Hinxton)ENSG00000148572 [Gene_View]  chr10:64893007-64914791 [Contig_View]  NRBF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148572 [Gene_View]  chr10:64893007-64914791 [Contig_View]  NRBF2 [Vega]
ICGC DataPortalENSG00000148572
TCGA cBioPortalNRBF2
AceView (NCBI)NRBF2
Genatlas (Paris)NRBF2
WikiGenes29982
SOURCE (Princeton)NRBF2
Genetics Home Reference (NIH)NRBF2
Genomic and cartography
GoldenPath hg19 (UCSC)NRBF2  -     chr10:64893007-64914791 +  10q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)NRBF2  -     10q21.3   [Description]    (hg38-Dec_2013)
EnsemblNRBF2 - 10q21.3 [CytoView hg19]  NRBF2 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBINRBF2 [Mapview hg19]  NRBF2 [Mapview hg38]
OMIM616477   
Gene and transcription
Genbank (Entrez)AF267866 AK054957 AK225256 AK225257 AK301656
RefSeq transcript (Entrez)NM_001282405 NM_030759
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)NRBF2
Cluster EST : UnigeneHs.449628 [ NCBI ]
CGAP (NCI)Hs.449628
Alternative Splicing GalleryENSG00000148572
Gene ExpressionNRBF2 [ NCBI-GEO ]   NRBF2 [ EBI - ARRAY_EXPRESS ]   NRBF2 [ SEEK ]   NRBF2 [ MEM ]
Gene Expression Viewer (FireBrowse)NRBF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29982
GTEX Portal (Tissue expression)NRBF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F24
Splice isoforms : SwissVarQ96F24
PhosPhoSitePlusQ96F24
Domains : Interpro (EBI)DUF1875   
Domain families : Pfam (Sanger)DUF1875 (PF08961)   
Domain families : Pfam (NCBI)pfam08961   
Conserved Domain (NCBI)NRBF2
DMDM Disease mutations29982
Blocks (Seattle)NRBF2
PDB (SRS)4ZEY   
PDB (PDBSum)4ZEY   
PDB (IMB)4ZEY   
PDB (RSDB)4ZEY   
Structural Biology KnowledgeBase4ZEY   
SCOP (Structural Classification of Proteins)4ZEY   
CATH (Classification of proteins structures)4ZEY   
SuperfamilyQ96F24
Human Protein AtlasENSG00000148572
Peptide AtlasQ96F24
HPRD11401
IPIIPI00550575   IPI00384236   IPI00909273   
Protein Interaction databases
DIP (DOE-UCLA)Q96F24
IntAct (EBI)Q96F24
FunCoupENSG00000148572
BioGRIDNRBF2
STRING (EMBL)NRBF2
ZODIACNRBF2
Ontologies - Pathways
QuickGOQ96F24
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  autophagosome  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  autophagy  regulation of autophagy  cytoplasmic, membrane-bounded vesicle  response to endoplasmic reticulum stress  phosphatidylinositol 3-kinase complex, class III  regulation of lipid kinase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  autophagosome  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  autophagy  regulation of autophagy  cytoplasmic, membrane-bounded vesicle  response to endoplasmic reticulum stress  phosphatidylinositol 3-kinase complex, class III  regulation of lipid kinase activity  
NDEx NetworkNRBF2
Atlas of Cancer Signalling NetworkNRBF2
Wikipedia pathwaysNRBF2
Orthology - Evolution
OrthoDB29982
GeneTree (enSembl)ENSG00000148572
Phylogenetic Trees/Animal Genes : TreeFamNRBF2
HOVERGENQ96F24
HOGENOMQ96F24
Homologs : HomoloGeneNRBF2
Homology/Alignments : Family Browser (UCSC)NRBF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRBF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRBF2
dbVarNRBF2
ClinVarNRBF2
1000_GenomesNRBF2 
Exome Variant ServerNRBF2
ExAC (Exome Aggregation Consortium)NRBF2 (select the gene name)
Genetic variants : HAPMAP29982
Genomic Variants (DGV)NRBF2 [DGVbeta]
DECIPHER (Syndromes)10:64893007-64914791  ENSG00000148572
CONAN: Copy Number AnalysisNRBF2 
Mutations
ICGC Data PortalNRBF2 
TCGA Data PortalNRBF2 
Broad Tumor PortalNRBF2
OASIS PortalNRBF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRBF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRBF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRBF2
DgiDB (Drug Gene Interaction Database)NRBF2
DoCM (Curated mutations)NRBF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRBF2 (select a term)
intoGenNRBF2
Cancer3DNRBF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616477   
Orphanet
MedgenNRBF2
Genetic Testing Registry NRBF2
NextProtQ96F24 [Medical]
TSGene29982
GENETestsNRBF2
Huge Navigator NRBF2 [HugePedia]
snp3D : Map Gene to Disease29982
BioCentury BCIQNRBF2
ClinGenNRBF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29982
Chemical/Pharm GKB GenePA134946285
Clinical trialNRBF2
Miscellaneous
canSAR (ICR)NRBF2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRBF2
EVEXNRBF2
GoPubMedNRBF2
iHOPNRBF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:12:41 CEST 2017

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