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NRBF2 (nuclear receptor binding factor 2)

Identity

Alias (NCBI)COPR
COPR1
COPR2
NRBF-2
HGNC (Hugo) NRBF2
HGNC Alias symbDKFZp564C1664
FLJ30395
COPR1
COPR2
HGNC Alias namecomodulator of PPAR and RXR 1
 comodulator of PPAR and RXR 2
LocusID (NCBI) 29982
Atlas_Id 55441
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 63133328 and ends at 63155024 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JMJD1C (10q21.3) / NRBF2 (10q21.3)NRBF2 (10q21.3) / CYP26A1 (10q23.33)NRBF2 (10q21.3) / RAPH1 (2q33.2)
NRBF2 (10q21.3) / RNF169 (11q13.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NRBF2   19692
Cards
Entrez_Gene (NCBI)NRBF2    nuclear receptor binding factor 2
AliasesCOPR; COPR1; COPR2; NRBF-2
GeneCards (Weizmann)NRBF2
Ensembl hg19 (Hinxton)ENSG00000148572 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148572 [Gene_View]  ENSG00000148572 [Sequence]  chr10:63133328-63155024 [Contig_View]  NRBF2 [Vega]
ICGC DataPortalENSG00000148572
TCGA cBioPortalNRBF2
AceView (NCBI)NRBF2
Genatlas (Paris)NRBF2
SOURCE (Princeton)NRBF2
Genetics Home Reference (NIH)NRBF2
Genomic and cartography
GoldenPath hg38 (UCSC)NRBF2  -     chr10:63133328-63155024 +  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRBF2  -     10q21.3   [Description]    (hg19-Feb_2009)
GoldenPathNRBF2 - 10q21.3 [CytoView hg19]  NRBF2 - 10q21.3 [CytoView hg38]
ImmunoBaseENSG00000148572
Genome Data Viewer NCBINRBF2 [Mapview hg19]  
OMIM616477   
Gene and transcription
Genbank (Entrez)AF267866 AK054957 AK225256 AK225257 AK301656
RefSeq transcript (Entrez)NM_001282405 NM_030759
Consensus coding sequences : CCDS (NCBI)NRBF2
Gene ExpressionNRBF2 [ NCBI-GEO ]   NRBF2 [ EBI - ARRAY_EXPRESS ]   NRBF2 [ SEEK ]   NRBF2 [ MEM ]
Gene Expression Viewer (FireBrowse)NRBF2 [ Firebrowse - Broad ]
GenevisibleExpression of NRBF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29982
GTEX Portal (Tissue expression)NRBF2
Human Protein AtlasENSG00000148572-NRBF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F24
PhosPhoSitePlusQ96F24
Domains : Interpro (EBI)NRBF2    NRBF2_C    NRBF2_MIT   
Domain families : Pfam (Sanger)NRBF2 (PF08961)    NRBF2_MIT (PF17169)   
Domain families : Pfam (NCBI)pfam08961    pfam17169   
Conserved Domain (NCBI)NRBF2
PDB (RSDB)4ZEY   
PDB Europe4ZEY   
PDB (PDBSum)4ZEY   
PDB (IMB)4ZEY   
Structural Biology KnowledgeBase4ZEY   
SCOP (Structural Classification of Proteins)4ZEY   
CATH (Classification of proteins structures)4ZEY   
SuperfamilyQ96F24
AlphaFold pdb e-kbQ96F24   
Human Protein Atlas [tissue]ENSG00000148572-NRBF2 [tissue]
HPRD11401
Protein Interaction databases
DIP (DOE-UCLA)Q96F24
IntAct (EBI)Q96F24
BioGRIDNRBF2
STRING (EMBL)NRBF2
ZODIACNRBF2
Ontologies - Pathways
QuickGOQ96F24
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  autophagosome  transcription initiation from RNA polymerase II promoter  autophagy  autophagy  cytoplasmic vesicle  response to endoplasmic reticulum stress  regulation of lipid kinase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  autophagosome  transcription initiation from RNA polymerase II promoter  autophagy  autophagy  cytoplasmic vesicle  response to endoplasmic reticulum stress  regulation of lipid kinase activity  
NDEx NetworkNRBF2
Atlas of Cancer Signalling NetworkNRBF2
Wikipedia pathwaysNRBF2
Orthology - Evolution
OrthoDB29982
GeneTree (enSembl)ENSG00000148572
Phylogenetic Trees/Animal Genes : TreeFamNRBF2
Homologs : HomoloGeneNRBF2
Homology/Alignments : Family Browser (UCSC)NRBF2
Gene fusions - Rearrangements
Fusion : QuiverNRBF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRBF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRBF2
dbVarNRBF2
ClinVarNRBF2
MonarchNRBF2
1000_GenomesNRBF2 
Exome Variant ServerNRBF2
GNOMAD BrowserENSG00000148572
Varsome BrowserNRBF2
ACMGNRBF2 variants
VarityQ96F24
Genomic Variants (DGV)NRBF2 [DGVbeta]
DECIPHERNRBF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRBF2 
Mutations
ICGC Data PortalNRBF2 
TCGA Data PortalNRBF2 
Broad Tumor PortalNRBF2
OASIS PortalNRBF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRBF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNRBF2
Mutations and Diseases : HGMDNRBF2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNRBF2
DgiDB (Drug Gene Interaction Database)NRBF2
DoCM (Curated mutations)NRBF2
CIViC (Clinical Interpretations of Variants in Cancer)NRBF2
Cancer3DNRBF2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616477   
Orphanet
DisGeNETNRBF2
MedgenNRBF2
Genetic Testing Registry NRBF2
NextProtQ96F24 [Medical]
GENETestsNRBF2
Target ValidationNRBF2
Huge Navigator NRBF2 [HugePedia]
ClinGenNRBF2
Clinical trials, drugs, therapy
MyCancerGenomeNRBF2
Protein Interactions : CTDNRBF2
Pharm GKB GenePA134946285
PharosQ96F24
Clinical trialNRBF2
Miscellaneous
canSAR (ICR)NRBF2
HarmonizomeNRBF2
DataMed IndexNRBF2
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNRBF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:17 CEST 2021

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