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NRDE2 (NRDE-2, necessary for RNA interference, domain containing)

Identity

Alias_namesC14orf102
chromosome 14 open reading frame 102
Alias_symbol (synonym)FLJ14051
Other alias
HGNC (Hugo) NRDE2
LocusID (NCBI) 55051
Atlas_Id 70964
Location 14q32.11  [Link to chromosome band 14q32]
Location_base_pair Starts at 90278054 and ends at 90332137 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NRDE2 (14q32.11) / CALM1 (14q32.11)NRDE2 (14q32.11) / GGA3 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRDE2   20186
Cards
Entrez_Gene (NCBI)NRDE2  55051  NRDE-2, necessary for RNA interference, domain containing
AliasesC14orf102
GeneCards (Weizmann)NRDE2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:90278054-90332137 [Contig_View]  NRDE2 [Vega]
TCGA cBioPortalNRDE2
AceView (NCBI)NRDE2
Genatlas (Paris)NRDE2
WikiGenes55051
SOURCE (Princeton)NRDE2
Genetics Home Reference (NIH)NRDE2
Genomic and cartography
GoldenPath hg38 (UCSC)NRDE2  -     chr14:90278054-90332137 -  14q32.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRDE2  -     14q32.11   [Description]    (hg19-Feb_2009)
EnsemblNRDE2 - 14q32.11 [CytoView hg19]  NRDE2 - 14q32.11 [CytoView hg38]
Mapping of homologs : NCBINRDE2 [Mapview hg19]  NRDE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000870 AK024113 AK094807 AK127843 AK294958
RefSeq transcript (Entrez)NM_017970 NM_199043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRDE2
Cluster EST : UnigeneHs.528131 [ NCBI ]
CGAP (NCI)Hs.528131
Gene ExpressionNRDE2 [ NCBI-GEO ]   NRDE2 [ EBI - ARRAY_EXPRESS ]   NRDE2 [ SEEK ]   NRDE2 [ MEM ]
Gene Expression Viewer (FireBrowse)NRDE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55051
GTEX Portal (Tissue expression)NRDE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7Z3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7Z3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7Z3
Splice isoforms : SwissVarQ9H7Z3
PhosPhoSitePlusQ9H7Z3
Domains : Interpro (EBI)NRDE-2    TPR-like_helical_dom   
Domain families : Pfam (Sanger)NRDE-2 (PF08424)   
Domain families : Pfam (NCBI)pfam08424   
Conserved Domain (NCBI)NRDE2
DMDM Disease mutations55051
Blocks (Seattle)NRDE2
SuperfamilyQ9H7Z3
Peptide AtlasQ9H7Z3
HPRD12625
IPIIPI00477539   IPI00303565   IPI01024978   IPI01024801   IPI01024915   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7Z3
IntAct (EBI)Q9H7Z3
BioGRIDNRDE2
STRING (EMBL)NRDE2
ZODIACNRDE2
Ontologies - Pathways
QuickGOQ9H7Z3
Ontology : AmiGOmolecular_function  cellular_component  biological_process  RNA interference  chromatin silencing by small RNA  catalytic step 2 spliceosome  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  RNA interference  chromatin silencing by small RNA  catalytic step 2 spliceosome  
NDEx NetworkNRDE2
Atlas of Cancer Signalling NetworkNRDE2
Wikipedia pathwaysNRDE2
Orthology - Evolution
OrthoDB55051
Phylogenetic Trees/Animal Genes : TreeFamNRDE2
HOVERGENQ9H7Z3
HOGENOMQ9H7Z3
Homologs : HomoloGeneNRDE2
Homology/Alignments : Family Browser (UCSC)NRDE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRDE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRDE2
dbVarNRDE2
ClinVarNRDE2
1000_GenomesNRDE2 
Exome Variant ServerNRDE2
ExAC (Exome Aggregation Consortium)NRDE2 (select the gene name)
Genetic variants : HAPMAP55051
Genomic Variants (DGV)NRDE2 [DGVbeta]
DECIPHERNRDE2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRDE2 
Mutations
ICGC Data PortalNRDE2 
TCGA Data PortalNRDE2 
Broad Tumor PortalNRDE2
OASIS PortalNRDE2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNRDE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRDE2
DgiDB (Drug Gene Interaction Database)NRDE2
DoCM (Curated mutations)NRDE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRDE2 (select a term)
intoGenNRDE2
Cancer3DNRDE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNRDE2
Genetic Testing Registry NRDE2
NextProtQ9H7Z3 [Medical]
TSGene55051
GENETestsNRDE2
Target ValidationNRDE2
Huge Navigator NRDE2 [HugePedia]
snp3D : Map Gene to Disease55051
BioCentury BCIQNRDE2
ClinGenNRDE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55051
Chemical/Pharm GKB GenePA134926790
Clinical trialNRDE2
Miscellaneous
canSAR (ICR)NRDE2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRDE2
EVEXNRDE2
GoPubMedNRDE2
iHOPNRDE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:04 CEST 2017

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