Atlas of Genetics and Cytogenetics in Oncology and Haematology


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NREP-AS1 (NREP antisense RNA 1)

Identity

Alias_namesNREP antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) NREP-AS1
LocusID (NCBI) 100873948
Atlas_Id 70965
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111912508 and ends at 112017306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NREP-AS1   40780
Cards
Entrez_Gene (NCBI)NREP-AS1  100873948  NREP antisense RNA 1
Aliases
GeneCards (Weizmann)NREP-AS1
Ensembl hg19 (Hinxton)ENSG00000250095 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250095 [Gene_View]  chr5:111912508-112017306 [Contig_View]  NREP-AS1 [Vega]
ICGC DataPortalENSG00000250095
TCGA cBioPortalNREP-AS1
AceView (NCBI)NREP-AS1
Genatlas (Paris)NREP-AS1
WikiGenes100873948
SOURCE (Princeton)NREP-AS1
Genetics Home Reference (NIH)NREP-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)NREP-AS1  -     chr5:111912508-112017306 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NREP-AS1  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblNREP-AS1 - 5q22.1 [CytoView hg19]  NREP-AS1 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBINREP-AS1 [Mapview hg19]  NREP-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX114072
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NREP-AS1
Cluster EST : UnigeneHs.147716 [ NCBI ]
CGAP (NCI)Hs.147716
Alternative Splicing GalleryENSG00000250095
Gene ExpressionNREP-AS1 [ NCBI-GEO ]   NREP-AS1 [ EBI - ARRAY_EXPRESS ]   NREP-AS1 [ SEEK ]   NREP-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)NREP-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873948
GTEX Portal (Tissue expression)NREP-AS1
Human Protein AtlasENSG00000250095-NREP-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)NREP-AS1
DMDM Disease mutations100873948
Blocks (Seattle)NREP-AS1
Human Protein Atlas [tissue]ENSG00000250095-NREP-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000250095
BioGRIDNREP-AS1
STRING (EMBL)NREP-AS1
ZODIACNREP-AS1
Ontologies - Pathways
Huge Navigator NREP-AS1 [HugePedia]
snp3D : Map Gene to Disease100873948
BioCentury BCIQNREP-AS1
ClinGenNREP-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873948
Clinical trialNREP-AS1
Miscellaneous
canSAR (ICR)NREP-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineNREP-AS1
EVEXNREP-AS1
GoPubMedNREP-AS1
iHOPNREP-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:12:35 CET 2017

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