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NREP (neuronal regeneration related protein)

Identity

Alias_namesC5orf13
chromosome 5 open reading frame 13
neuronal regeneration related protein homolog (rat)
Alias_symbol (synonym)P311
D4S114
PRO1873
PTZ17
SEZ17
Other alias
HGNC (Hugo) NREP
LocusID (NCBI) 9315
Atlas_Id 50160
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111729303 and ends at 111976931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NREP (5q22.1) / COMMD10 (5q23.1)WDR36 (5q22.1) / NREP (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NREP   16834
Cards
Entrez_Gene (NCBI)NREP  9315  neuronal regeneration related protein
AliasesC5orf13; D4S114; P311; PRO1873; 
PTZ17; SEZ17
GeneCards (Weizmann)NREP
Ensembl hg19 (Hinxton)ENSG00000134986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134986 [Gene_View]  chr5:111729303-111976931 [Contig_View]  NREP [Vega]
ICGC DataPortalENSG00000134986
TCGA cBioPortalNREP
AceView (NCBI)NREP
Genatlas (Paris)NREP
WikiGenes9315
SOURCE (Princeton)NREP
Genetics Home Reference (NIH)NREP
Genomic and cartography
GoldenPath hg38 (UCSC)NREP  -     chr5:111729303-111976931 -  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NREP  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblNREP - 5q22.1 [CytoView hg19]  NREP - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBINREP [Mapview hg19]  NREP [Mapview hg38]
OMIM607332   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001142474 NM_001142475 NM_001142476 NM_001142477 NM_001142478 NM_001142479 NM_001142480 NM_001142481 NM_001142482 NM_001142483 NM_004772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NREP
Cluster EST : UnigeneHs.745061 [ NCBI ]
CGAP (NCI)Hs.745061
Alternative Splicing GalleryENSG00000134986
Gene ExpressionNREP [ NCBI-GEO ]   NREP [ EBI - ARRAY_EXPRESS ]   NREP [ SEEK ]   NREP [ MEM ]
Gene Expression Viewer (FireBrowse)NREP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9315
GTEX Portal (Tissue expression)NREP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16612   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16612  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16612
Splice isoforms : SwissVarQ16612
PhosPhoSitePlusQ16612
Domains : Interpro (EBI)Neuronal_3.1   
Domain families : Pfam (Sanger)Alveol-reg_P311 (PF11092)   
Domain families : Pfam (NCBI)pfam11092   
Domain structure : Prodom (Prabi Lyon)PD019364 (PD019364)   
Conserved Domain (NCBI)NREP
DMDM Disease mutations9315
Blocks (Seattle)NREP
SuperfamilyQ16612
Human Protein AtlasENSG00000134986
Peptide AtlasQ16612
HPRD09545
IPIIPI00003353   IPI00383320   IPI00915416   IPI00968248   IPI00915278   IPI01025198   IPI00964004   IPI00967475   IPI00967968   
Protein Interaction databases
DIP (DOE-UCLA)Q16612
IntAct (EBI)Q16612
FunCoupENSG00000134986
BioGRIDNREP
STRING (EMBL)NREP
ZODIACNREP
Ontologies - Pathways
QuickGOQ16612
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkNREP
Atlas of Cancer Signalling NetworkNREP
Wikipedia pathwaysNREP
Orthology - Evolution
OrthoDB9315
GeneTree (enSembl)ENSG00000134986
Phylogenetic Trees/Animal Genes : TreeFamNREP
HOVERGENQ16612
HOGENOMQ16612
Homologs : HomoloGeneNREP
Homology/Alignments : Family Browser (UCSC)NREP
Gene fusions - Rearrangements
Fusion : MitelmanNREP/COMMD10 [5q22.1/5q23.1]  
Fusion : MitelmanWDR36/NREP [5q22.1/5q22.1]  [t(5;5)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNREP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NREP
dbVarNREP
ClinVarNREP
1000_GenomesNREP 
Exome Variant ServerNREP
ExAC (Exome Aggregation Consortium)NREP (select the gene name)
Genetic variants : HAPMAP9315
Genomic Variants (DGV)NREP [DGVbeta]
DECIPHERNREP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNREP 
Mutations
ICGC Data PortalNREP 
TCGA Data PortalNREP 
Broad Tumor PortalNREP
OASIS PortalNREP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDNREP
BioMutasearch NREP
DgiDB (Drug Gene Interaction Database)NREP
DoCM (Curated mutations)NREP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NREP (select a term)
intoGenNREP
Cancer3DNREP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607332   
Orphanet
MedgenNREP
Genetic Testing Registry NREP
NextProtQ16612 [Medical]
TSGene9315
GENETestsNREP
Target ValidationNREP
Huge Navigator NREP [HugePedia]
snp3D : Map Gene to Disease9315
BioCentury BCIQNREP
ClinGenNREP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9315
Chemical/Pharm GKB GenePA128394547
Clinical trialNREP
Miscellaneous
canSAR (ICR)NREP (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNREP
EVEXNREP
GoPubMedNREP
iHOPNREP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:22:42 CEST 2017

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