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NREP (neuronal regeneration related protein)

Identity

Alias (NCBI)C5orf13
D4S114
P311
PRO1873
PTZ17
SEZ17
HGNC (Hugo) NREP
HGNC Alias symbP311
D4S114
PRO1873
PTZ17
SEZ17
HGNC Alias nameneuronal protein 3.1
HGNC Previous nameC5orf13
HGNC Previous namechromosome 5 open reading frame 13
 neuronal regeneration related protein homolog (rat)
LocusID (NCBI) 9315
Atlas_Id 50160
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 111729303 and ends at 111757194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NREP (5q22.1)::COMMD10 (5q23.1)WDR36 (5q22.1)::NREP (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)NREP   16834
Cards
Entrez_Gene (NCBI)NREP    neuronal regeneration related protein
AliasesC5orf13; D4S114; P311; PRO1873; 
PTZ17; SEZ17
GeneCards (Weizmann)NREP
Ensembl hg19 (Hinxton)ENSG00000134986 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134986 [Gene_View]  ENSG00000134986 [Sequence]  chr5:111729303-111757194 [Contig_View]  NREP [Vega]
ICGC DataPortalENSG00000134986
TCGA cBioPortalNREP
AceView (NCBI)NREP
Genatlas (Paris)NREP
SOURCE (Princeton)NREP
Genetics Home Reference (NIH)NREP
Genomic and cartography
GoldenPath hg38 (UCSC)NREP  -     chr5:111729303-111757194 -  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NREP  -     5q22.1   [Description]    (hg19-Feb_2009)
GoldenPathNREP - 5q22.1 [CytoView hg19]  NREP - 5q22.1 [CytoView hg38]
ImmunoBaseENSG00000134986
Genome Data Viewer NCBINREP [Mapview hg19]  
OMIM607332   
Gene and transcription
Genbank (Entrez)AF119859 AK021624 AK298779 AK307346 AK309667
RefSeq transcript (Entrez)NM_001142474 NM_001142475 NM_001142476 NM_001142477 NM_001142478 NM_001142479 NM_001142480 NM_001142481 NM_001142482 NM_001142483 NM_004772
Consensus coding sequences : CCDS (NCBI)NREP
Gene ExpressionNREP [ NCBI-GEO ]   NREP [ EBI - ARRAY_EXPRESS ]   NREP [ SEEK ]   NREP [ MEM ]
Gene Expression Viewer (FireBrowse)NREP [ Firebrowse - Broad ]
GenevisibleExpression of NREP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9315
GTEX Portal (Tissue expression)NREP
Human Protein AtlasENSG00000134986-NREP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16612   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16612  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16612
PhosPhoSitePlusQ16612
Domains : Interpro (EBI)Neuronal_3.1   
Domain families : Pfam (Sanger)Alveol-reg_P311 (PF11092)   
Domain families : Pfam (NCBI)pfam11092   
Conserved Domain (NCBI)NREP
SuperfamilyQ16612
AlphaFold pdb e-kbQ16612   
Human Protein Atlas [tissue]ENSG00000134986-NREP [tissue]
HPRD09545
Protein Interaction databases
DIP (DOE-UCLA)Q16612
IntAct (EBI)Q16612
BioGRIDNREP
STRING (EMBL)NREP
ZODIACNREP
Ontologies - Pathways
QuickGOQ16612
Ontology : AmiGOprotein binding  nucleus  cytoplasm  regulation of transforming growth factor beta receptor signaling pathway  axon regeneration  regulation of neuron differentiation  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  regulation of transforming growth factor beta receptor signaling pathway  axon regeneration  regulation of neuron differentiation  
NDEx NetworkNREP
Atlas of Cancer Signalling NetworkNREP
Wikipedia pathwaysNREP
Orthology - Evolution
OrthoDB9315
GeneTree (enSembl)ENSG00000134986
Phylogenetic Trees/Animal Genes : TreeFamNREP
Homologs : HomoloGeneNREP
Homology/Alignments : Family Browser (UCSC)NREP
Gene fusions - Rearrangements
Fusion : MitelmanNREP::COMMD10 [5q22.1/5q23.1]  
Fusion : MitelmanWDR36::NREP [5q22.1/5q22.1]  
Fusion : QuiverNREP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNREP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NREP
dbVarNREP
ClinVarNREP
MonarchNREP
1000_GenomesNREP 
Exome Variant ServerNREP
GNOMAD BrowserENSG00000134986
Varsome BrowserNREP
ACMGNREP variants
VarityQ16612
Genomic Variants (DGV)NREP [DGVbeta]
DECIPHERNREP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNREP 
Mutations
ICGC Data PortalNREP 
TCGA Data PortalNREP 
Broad Tumor PortalNREP
OASIS PortalNREP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNREP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DNREP
Mutations and Diseases : HGMDNREP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaNREP
DgiDB (Drug Gene Interaction Database)NREP
DoCM (Curated mutations)NREP
CIViC (Clinical Interpretations of Variants in Cancer)NREP
Cancer3DNREP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607332   
Orphanet
DisGeNETNREP
MedgenNREP
Genetic Testing Registry NREP
NextProtQ16612 [Medical]
GENETestsNREP
Target ValidationNREP
Huge Navigator NREP [HugePedia]
ClinGenNREP
Clinical trials, drugs, therapy
MyCancerGenomeNREP
Protein Interactions : CTDNREP
Pharm GKB GenePA128394547
PharosQ16612
Clinical trialNREP
Miscellaneous
canSAR (ICR)NREP
HarmonizomeNREP
ARCHS4NREP
DataMed IndexNREP
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXNREP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 18:25:21 CET 2022

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