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NRIP2 (nuclear receptor interacting protein 2)

Identity

Alias_symbol (synonym)DKFZP761G1913
Other alias-
HGNC (Hugo) NRIP2
LocusID (NCBI) 83714
Atlas_Id 70970
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 2825348 and ends at 2835055 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)NRIP2   23078
Cards
Entrez_Gene (NCBI)NRIP2  83714  nuclear receptor interacting protein 2
Aliases
GeneCards (Weizmann)NRIP2
Ensembl hg19 (Hinxton)ENSG00000053702 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000053702 [Gene_View]  chr12:2825348-2835055 [Contig_View]  NRIP2 [Vega]
ICGC DataPortalENSG00000053702
TCGA cBioPortalNRIP2
AceView (NCBI)NRIP2
Genatlas (Paris)NRIP2
WikiGenes83714
SOURCE (Princeton)NRIP2
Genetics Home Reference (NIH)NRIP2
Genomic and cartography
GoldenPath hg38 (UCSC)NRIP2  -     chr12:2825348-2835055 -  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRIP2  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblNRIP2 - 12p13.33 [CytoView hg19]  NRIP2 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBINRIP2 [Mapview hg19]  NRIP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054740 AK098063 AK300944 AL136557 AM393084
RefSeq transcript (Entrez)NM_031474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRIP2
Cluster EST : UnigeneHs.530816 [ NCBI ]
CGAP (NCI)Hs.530816
Alternative Splicing GalleryENSG00000053702
Gene ExpressionNRIP2 [ NCBI-GEO ]   NRIP2 [ EBI - ARRAY_EXPRESS ]   NRIP2 [ SEEK ]   NRIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)NRIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83714
GTEX Portal (Tissue expression)NRIP2
Human Protein AtlasENSG00000053702-NRIP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQI9
Splice isoforms : SwissVarQ9BQI9
PhosPhoSitePlusQ9BQI9
Domains : Interpro (EBI)NRIP_C    Peptidase_aspartic_DDI1-type    Peptidase_aspartic_dom   
Domain families : Pfam (Sanger)Asp_protease (PF09668)   
Domain families : Pfam (NCBI)pfam09668   
Conserved Domain (NCBI)NRIP2
DMDM Disease mutations83714
Blocks (Seattle)NRIP2
SuperfamilyQ9BQI9
Human Protein Atlas [tissue]ENSG00000053702-NRIP2 [tissue]
Peptide AtlasQ9BQI9
HPRD14839
IPIIPI00027819   IPI01012427   IPI00921344   IPI01011058   IPI01012423   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQI9
IntAct (EBI)Q9BQI9
FunCoupENSG00000053702
BioGRIDNRIP2
STRING (EMBL)NRIP2
ZODIACNRIP2
Ontologies - Pathways
QuickGOQ9BQI9
Ontology : AmiGOaspartic-type endopeptidase activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  proteolysis  
Ontology : EGO-EBIaspartic-type endopeptidase activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  proteolysis  
NDEx NetworkNRIP2
Atlas of Cancer Signalling NetworkNRIP2
Wikipedia pathwaysNRIP2
Orthology - Evolution
OrthoDB83714
GeneTree (enSembl)ENSG00000053702
Phylogenetic Trees/Animal Genes : TreeFamNRIP2
HOVERGENQ9BQI9
HOGENOMQ9BQI9
Homologs : HomoloGeneNRIP2
Homology/Alignments : Family Browser (UCSC)NRIP2
Gene fusions - Rearrangements
Fusion: Tumor Portal NRIP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRIP2
dbVarNRIP2
ClinVarNRIP2
1000_GenomesNRIP2 
Exome Variant ServerNRIP2
ExAC (Exome Aggregation Consortium)ENSG00000053702
GNOMAD BrowserENSG00000053702
Genetic variants : HAPMAP83714
Genomic Variants (DGV)NRIP2 [DGVbeta]
DECIPHERNRIP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRIP2 
Mutations
ICGC Data PortalNRIP2 
TCGA Data PortalNRIP2 
Broad Tumor PortalNRIP2
OASIS PortalNRIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRIP2
DgiDB (Drug Gene Interaction Database)NRIP2
DoCM (Curated mutations)NRIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRIP2 (select a term)
intoGenNRIP2
Cancer3DNRIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenNRIP2
Genetic Testing Registry NRIP2
NextProtQ9BQI9 [Medical]
TSGene83714
GENETestsNRIP2
Target ValidationNRIP2
Huge Navigator NRIP2 [HugePedia]
snp3D : Map Gene to Disease83714
BioCentury BCIQNRIP2
ClinGenNRIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83714
Chemical/Pharm GKB GenePA134978127
Clinical trialNRIP2
Miscellaneous
canSAR (ICR)NRIP2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRIP2
EVEXNRIP2
GoPubMedNRIP2
iHOPNRIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:24 CET 2017

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