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NRIP3 (nuclear receptor interacting protein 3)

Identity

Alias_namesC11orf14
chromosome 11 open reading frame 14
Other aliasNY-SAR-105
HGNC (Hugo) NRIP3
LocusID (NCBI) 56675
Atlas_Id 51196
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8980576 and ends at 9004049 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DPYD (1p21.3) / NRIP3 (11p15.4)KMT2A (11q23.3) / NRIP3 (11p15.4)KMT2A NRIP3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  inv(11)(p15q23):t(11;11)(p15;q23) KMT2A/NRIP3
inv(11)(p15q23)|t(11;11)(p15;q23) KMT2A/NRIP3

External links

Nomenclature
HGNC (Hugo)NRIP3   1167
Cards
Entrez_Gene (NCBI)NRIP3  56675  nuclear receptor interacting protein 3
AliasesC11orf14; NY-SAR-105
GeneCards (Weizmann)NRIP3
Ensembl hg19 (Hinxton)ENSG00000175352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175352 [Gene_View]  ENSG00000175352 [Sequence]  chr11:8980576-9004049 [Contig_View]  NRIP3 [Vega]
ICGC DataPortalENSG00000175352
TCGA cBioPortalNRIP3
AceView (NCBI)NRIP3
Genatlas (Paris)NRIP3
WikiGenes56675
SOURCE (Princeton)NRIP3
Genetics Home Reference (NIH)NRIP3
Genomic and cartography
GoldenPath hg38 (UCSC)NRIP3  -     chr11:8980576-9004049 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)NRIP3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblNRIP3 - 11p15.4 [CytoView hg19]  NRIP3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBINRIP3 [Mapview hg19]  NRIP3 [Mapview hg38]
OMIM613125   
Gene and transcription
Genbank (Entrez)AK024750 AK093229 AK098694 AK296484 AY211930
RefSeq transcript (Entrez)NM_020645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)NRIP3
Cluster EST : UnigeneHs.523467 [ NCBI ]
CGAP (NCI)Hs.523467
Alternative Splicing GalleryENSG00000175352
Gene ExpressionNRIP3 [ NCBI-GEO ]   NRIP3 [ EBI - ARRAY_EXPRESS ]   NRIP3 [ SEEK ]   NRIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)NRIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56675
GTEX Portal (Tissue expression)NRIP3
Human Protein AtlasENSG00000175352-NRIP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ35
Splice isoforms : SwissVarQ9NQ35
PhosPhoSitePlusQ9NQ35
Domains : Interpro (EBI)NRIP_C    Peptidase_aspartic_DDI1-type    Peptidase_aspartic_dom_sf   
Domain families : Pfam (Sanger)Asp_protease (PF09668)   
Domain families : Pfam (NCBI)pfam09668   
Conserved Domain (NCBI)NRIP3
DMDM Disease mutations56675
Blocks (Seattle)NRIP3
SuperfamilyQ9NQ35
Human Protein Atlas [tissue]ENSG00000175352-NRIP3 [tissue]
Peptide AtlasQ9NQ35
HPRD14840
IPIIPI00009882   IPI00871733   IPI00978700   IPI00977817   IPI00976753   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ35
IntAct (EBI)Q9NQ35
FunCoupENSG00000175352
BioGRIDNRIP3
STRING (EMBL)NRIP3
ZODIACNRIP3
Ontologies - Pathways
QuickGOQ9NQ35
Ontology : AmiGOaspartic-type endopeptidase activity  protein binding  proteolysis  
Ontology : EGO-EBIaspartic-type endopeptidase activity  protein binding  proteolysis  
NDEx NetworkNRIP3
Atlas of Cancer Signalling NetworkNRIP3
Wikipedia pathwaysNRIP3
Orthology - Evolution
OrthoDB56675
GeneTree (enSembl)ENSG00000175352
Phylogenetic Trees/Animal Genes : TreeFamNRIP3
HOVERGENQ9NQ35
HOGENOMQ9NQ35
Homologs : HomoloGeneNRIP3
Homology/Alignments : Family Browser (UCSC)NRIP3
Gene fusions - Rearrangements
Fusion : QuiverNRIP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerNRIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)NRIP3
dbVarNRIP3
ClinVarNRIP3
1000_GenomesNRIP3 
Exome Variant ServerNRIP3
ExAC (Exome Aggregation Consortium)ENSG00000175352
GNOMAD BrowserENSG00000175352
Varsome BrowserNRIP3
Genetic variants : HAPMAP56675
Genomic Variants (DGV)NRIP3 [DGVbeta]
DECIPHERNRIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisNRIP3 
Mutations
ICGC Data PortalNRIP3 
TCGA Data PortalNRIP3 
Broad Tumor PortalNRIP3
OASIS PortalNRIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICNRIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDNRIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch NRIP3
DgiDB (Drug Gene Interaction Database)NRIP3
DoCM (Curated mutations)NRIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)NRIP3 (select a term)
intoGenNRIP3
Cancer3DNRIP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613125   
Orphanet
DisGeNETNRIP3
MedgenNRIP3
Genetic Testing Registry NRIP3
NextProtQ9NQ35 [Medical]
TSGene56675
GENETestsNRIP3
Target ValidationNRIP3
Huge Navigator NRIP3 [HugePedia]
snp3D : Map Gene to Disease56675
BioCentury BCIQNRIP3
ClinGenNRIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56675
Chemical/Pharm GKB GenePA25481
Clinical trialNRIP3
Miscellaneous
canSAR (ICR)NRIP3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineNRIP3
EVEXNRIP3
GoPubMedNRIP3
iHOPNRIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:41:30 CEST 2018
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